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Instituts/ Institut de biologie et de technologies de Saclay (iBiTec-S)/ Unités/ Service de biologie intégrative et génétique moléculaire (SBIGeM )/ Laboratoire de physio génomique (LPG)/ Adaptation du SAGE pour micro-quantités/ Données expérimentales/ Data sets

Data sets





Serial microanalysis of renal transcriptomes.
Virlon B, Cheval L, Buhler JM, Billon E, Doucet A and Elalouf JM
Proceedings of the National Academy of Sciences USA, 1999, 96: 15286-15291

Data obtained on the mouse kidney.

The following tables list all tags detected twice or more, except for mitochondrial tags which were excluded from the report. The number of tags sequenced (nuclear + mitochondrial) were as follows: kidney = 12,154; MTAL = 7,438; OMCD = 7,563. Tags identification was performed using SAGE software and cDNA sequences available from GenBank release 112.
  1. Whole kidney
  2. Medullary thick ascending limb of Henle's loop
  3. Outer medullary collecting duct



 Gene expression profiles in normal and Otx2 -/- early gastrulating mouse embryos.
Zakin L, Reversade B, Virlon B, Rusniok C, Glaser P, Elalouf JM and Brûlet P
Proceedings of the National Academy of Sciences USA, 2000, 97: 14388-14393

Data obtained on 6.5 days postcoitum (dpc) mouse embryos.

 The following tables list all tags detected twice or more, except for mitochondrial tags which were excluded from the report. The number of tags sequenced (nuclear + mitochondrial) were as follows: wild type 6.5 dpc embryos = 27,100; Otx2-/- 6.5 dpc embryos = 21,443. The tables provide crude data, whereas in Zakin et al. (2000) data obtained in Otx2-/- embryos are normalized to 27,100. Tags identification was performed using SAGE software and cDNA sequences available from GenBank release 120.

  1. Wild type (WT) embryos
  2. Otx2-/- embryos



Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin.
Robert-Nicoud M, Flahaut M, Elalouf JM, Nicod M, Salinas M, Bens M, Doucet A, Wincker P, Artiguenave F, Horisberger JD, Vandewalle A, Rossier BC and Firsov D
Proceedings of the National Academy of Sciences USA, 2001, 98(5): 2712-2716

The following tables display all tags differentially represented in SADE libraries generated from a clonal cell line (mpkCCDcl4) established from the mouse cortical collecting duct principal cell. Cells were studied either under control condition, or following a 4-hour incubation period in the presence of aldosterone or arginine vasopressin (AVP).

  1. Aldosterone Induced Transcripts (AITs) and Aldosterone Repressed Transcripts (ARTs)
  2. Vasopressin Induced Transcripts (VITs) and Vasopressin Repressed Transcripts (VRTs)

Data obtained on the mouse principal collecting duct cell line (mpkCCDcl4).

 The following tables list all tags detected twice or more, except for mitochondrial tags which were excluded from the report. The number of tags sequenced (nuclear + mitochondrial) were as follows: Control = 39,091; Aldosterone 4h = 62,796; AVP 4h = 67,834. Tags identification was performed using SAGE software and cDNA sequences available fron GenBank release 120.
  1. Control
  2. Aldosterone 4h
  3. AVP 4h



JME, JCA