Salvi D, Moyet L, Seigneurin-Berny D, Ferro M, Joyard J and Rolland N
Preparation of envelope membrane fractions from Arabidopsis chloroplasts for proteomic analysis and other studies.
Methods in Molecular Biology, 2011, 775: 189-206
Publications
Publications 2013 - 2012 - 2011 - 2010 - 2009 - 2008 - 2007 - 2006 - 2005 - 2004 - 2003 - 2002 - 2001 - 2000
2013 
Bougdour A, Durandau E, Brenier-Pinchart MP, Ortet P, Barakat M, Kieffer S, Curt-Varesano A, Curt-Bertini RL, Bastien O, Coute Y, Pelloux H and Hakimi MA
Host cell subversion by Toxoplasma GRA16, an exported dense granule protein that targets the host cell nucleus and alters gene expression.
Cell Host & Microbe, 2013, 13(4): 489-500
Casabona MG, Silverman JM, Sall KM, Boyer F, Coute Y, Poirel J, Grunwald D, Mougous JD, Elsen S and Attree I
An ABC transporter and an outer membrane lipoprotein participate in posttranslational activation of type VI secretion in Pseudomonas aeruginosa.
Environmental Microbiology, 2013, 15(2): 471-486
Deshiere A, Duchemin-Pelletier E, Spreux E, Ciais D, Combes F, Vandenbrouck Y, Couté Y, Mikaelian I, Giusiano S, Charpin C, Cochet C and Filhol O
Unbalanced expression of CK2 kinase subunits is sufficient to drive epithelial-to-mesenchymal transition by Snail1 induction.
Oncogene, 2013, 32: 1373-1383
Habif G, Grasset MF, Kieffer-Jaquinod S, Kuhn L, Mouchiroud G and Gobert-Gosse S
Phosphoproteome analyses reveal specific implications of Hcls1, p21-activated kinase 1 and Ezrin in proliferation of a myeloid progenitor cell line downstream of wild-type and ITD mutant Fms-like tyrosine kinase 3 receptors.
Journal of Proteomics, 2013, 78: 231-244
van Lis R, Baffert C, Coute Y, Nitschke W and Atteia A
Chlamydomonas reinhardtii chloroplasts contain a homodimeric pyruvate: Ferredoxin oxidoreductase that functions with FDX1.
Plant Physiology, 2013, 161(1): 57-71
Zaccaria A, Bouamrani A, Selek L, El Atifi M, Hesse AM, Ratel D, Juhem A, Mathieu H, Couté Y, Bruley C, Garin J, Benabid AL, Chabardes S, Piallat B and Berger F
A micro silicon chip for in vivo cerebral imprint in monkey.
ACS Chemical Neuroscience, 2013, 4(3): 385-392
2012
Adrait A, Lebert D, Trauchessec M, Dupuis A, Louwagie M, Masselon C, Jaquinod M, Chevalier B, Vandenesch F, Garin J, Bruley C and Brun V
Development of a protein standard absolute quantification (PSAQ™) assay for the quantification of Staphylococcus aureus enterotoxin A in serum.
Journal of Proteomics, 2012, 75(10): 3041-3049
Bruley C, Dupierris V, Salvi D, Rolland N and Ferro M
AT_CHLORO - A chloroplast database dedicated to sub-plastidial localization.
Frontiers in Plant Science, 2012, 3: 205
Burger T and Destercke S
Random generation of mass functions: A short howto In Belief Functions: Theory and Applications, édité par Denoeux T and Masson MH. Advances in Intelligent and Soft Computing, 2012, vol.164, pp 145-152
Destercke S and Burger T
Revisiting the notion of conflicting belief functions In Belief Functions: Theory and Applications, édité par Denoeux T and Masson MH. Advances in Intelligent and Soft Computing, 2012, vol.164, pp 153-160
Filhol O, Ciais D, Lajaunie C, Charbonnier P, Foveau N, Vert JP and Vandenbrouck Y
DSIR: Assessing the design of highly potent siRNA by testing a set of cancer-relevant target genes.
PLoS One, 2012, 7(10): e48057
Forestier A, Sarrazy F, Caillat S, Vandenbrouck Y and Sauvaigo S
Functional DNA repair signature of cancer cell lines exposed to a set of cytotoxic anticancer drugs using a multiplexed enzymatic repair assay on biochip.
PLoS One, 2012, 7(12): e51754
Govin J, Gaucher J, Ferro M, Debernardi A, Garin J, Khochbin S and Rousseaux S
Proteomic strategy for the identification of critical actors in reorganization of the post-meiotic male genome.
Molecular Human Reproduction, 2012, 18(1): 1-13
Greco A, Arata L, Soler E, Gaume X, Couté Y, Hacot S, Callé A, Monier K, Epstein AL, Sanchez JC, Bouvet P and Diaz JJ
Nucleolin interacts with US11 protein of herpes simplex virus 1 and is involved in its trafficking.
Journal of Virology, 2012, 86(3): 1449-1457
Huang Y, Yoon SH, Heron SR, Masselon CD, Edgar JS, Turecek F and Goodlett DR
Surface acoustic wave nebulization produces ions with lower internal energy than electrospray ionization.
Journal of the American Society for Mass Spectrometry, 2012, 23(6): 1062-1070
Huillet C, Adrait A, Lebert D, Picard G, Trauchessec M, Louwagie M, Dupuis A, Hittinger L, Ghaleh B, Le Corvoisier P, Jaquinod M, Garin J, Bruley C and Brun V
Accurate quantification of cardiovascular biomarkers in serum using protein standard absolute quantification (PSAQ™) and selected reaction monitoring.
Molecular and Cellular Proteomics, 2012, 11(2): M111.008235
Ivaldi C, Martin BR, Kieffer-Jaquinod S, Chapel A, Levade T, Garin J and Journet A
Proteomic analysis of S-acylated proteins in human B cells reveals palmitoylation of the immune regulators CD20 and CD23.
PLoS One, 2012, 7(5): e37187
Jaquinod M, Trauchessec M, Huillet C, Louwagie M, Lebert D, Picard G, Adrait A, Dupuis A, Garin J, Brun V and Bruley C
Mass spectrometry-based absolute protein quantification: PSAQ™ strategy makes use of "noncanonical" proteotypic peptides.
Proteomics, 2012, 12(8): 1217-1221
Jézégou A, Llinares E, Anne C, Kieffer-Jaquinod S, O'Regan S, Aupetit J, Chabli A, Sagné C, Debacker C, Chadefaux-Vekemans B, Journet A, André B and Gasnier B
Heptahelical protein PQLC2 is a lysosomal cationic amino acid exporter underlying the action of cysteamine in cystinosis therapy.
Proceedings of the National Academy of Sciences, 2012, 109(50): E3434-3443
Journet A, Klein G, Brugiere S, Vandenbrouck Y, Chapel A, Kieffer S, Bruley C, Masselon C and Aubry L
Investigating the macropinocytic proteome of Dictyostelium amoebae by high-resolution mass spectrometry.
Proteomics, 2012, 12(2): 241-245
Kurowska M, Goudin N, Nehme NT, Court M, Garin J, Fischer A, de Saint Basile G and Ménasché G
Terminal transport of lytic granules to the immune synapse is mediated by the kinesin-1/Slp3/Rab27a complex.
Blood, 2012, 119(17): 3879-3889
Louwagie M, Kieffer-Jaquinod S, Dupierris V, Coute Y, Bruley C, Garin J, Dupuis A, Jaquinod M and Brun V
Introducing AAA-MS, a rapid and sensitive method for amino acid analysis using isotope dilution and high-resolution mass spectrometry.
Journal of Proteome Research, 2012, 11(7): 3929-3936
Lupo J, Conti A, Sueur C, Coly P-A, Couté Y, Hunziker W, Burmeister WP, Germi R, Manet E, Gruffat H, Morand P and Boyer V
Identification of new interacting partners of the shuttling protein ubinuclein (Ubn-1).
Experimental Cell Research, 2012, 318(5): 509-520
Merle N, Féraud O, Gilquin B, Hubstenberger A, Kieffer-Jacquinot S, Assard N, Bennaceur-Griscelli A, Honnorat J and Baudier J
ATAD3B is a human embryonic stem cell specific mitochondrial protein, re-expressed in cancer cells, that functions as dominant negative for the ubiquitous ATAD3A.
Mitochondrion, 2012, 12(4): 441-448
Mininno M, Brugiere S, Pautre V, Gilgen A, Ma S, Ferro M, Tardif M, Alban C and Ravanel S
Characterization of chloroplastic fructose 1,6-bisphosphate aldolases as lysine-methylated proteins in plants.
Journal of Biological Chemistry, 2012, 287(25): 21034-21044
Ozeir M, Xie LX, Chehade MH, Tang JY, Chen JY, Kieffer-Jaquinod S, Fontecave M, Clarke CF and Pierrel F
In vivo accumulation of coenzyme Q biosynthetic intermediates and aminated analogs in the yeast Saccharomyces cerevisiae.
Biochimica et Biophysica Acta (BBA) - Bioenergetics, 2012, 1817, Supplement: S92
Paik YK, Omenn GS, Uhlen M, Hanash S, Marko-Varga G, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee HJ, Na K, Jeong SK, He F, Binz PA, Nishimura T, Keown P, Baker MS, Yoo JS, Garin J, Archakov A, Bergeron J, Salekdeh GH and Hancock WS
Standard guidelines for the chromosome-centric human proteome project.
Journal of Proteome Research, 2012, 11(4): 2005-2013
Picard G, Lebert D, Louwagie M, Adrait A, Huillet C, Vandenesch F, Bruley C, Garin J, Jaquinod M and Brun V
PSAQ standards for accurate MS-based quantification of proteins: From the concept to biomedical applications.
Journal of Mass Spectrometry, 2012, 47(10): 1353-1363
Schvartz D, Couté Y, Brunner Y, Wollheim CB and Sanchez JC
Modulation of neuronal pentraxin 1 expression in rat pancreatic ß-cells submitted to chronic glucotoxic stress.
Molecular and Cellular Proteomics, 2012, 11(8): 244-254
Tarasova IA, Perlova TY, Pridatchenko ML, Goloborod’ko AA, Levitsky LI, Evreinov VV, Guryca V, Masselon CD, Gorshkov AV and Gorshkov MV
Inversion of chromatographic elution orders of peptides and its importance for proteomics.
Journal of Analytical Chemistry, 2012, 67(13): 1014–1025
Tardif M, Atteia A, Specht M, Cogne G, Rolland N, Brugiere S, Hippler M, Ferro M, Bruley C, Peltier G, Vallon O and Cournac L
PredAlgo, a new subcellular localization prediction tool dedicated to green algae.
Molecular Biology and Evolution, 2012, 29(12): 3625-3639
Tarrago L, Kieffer-Jaquinod S, Lamant T, Marcellin M, Garin J, Rouhier N and Rey P
Affinity chromatography: A valuable strategy to isolate substrates of methionine sulfoxide reductases?
Antioxidants & Redox Signaling, 2012, 16: 79-84
Wade A, Thomas C, Kalmar B, Terenzio M, Garin J, Greensmith L and Schiavo G
Activated leukocyte cell adhesion molecule modulates neurotrophin signaling.
Journal of Neurochemistry, 2012, 121(4): 575-586
Xie LX, Ozeir M, Tang JY, Chen JY, Kieffer-Jaquinod S, Fontecave M, Clarke CF and Pierrel F
Over-expression of the Coq8 kinase in Saccharomyces cerevisiae coq null mutants allows for accumulation of diagnostic intermediates of the Coenzyme Q6 biosynthetic pathway.
Journal of Biological Chemistry, 2012, 287(28): 23571-23581
Yoon SH, Huang Y, Edgar JS, Ting YS, Heron SR, Kao Y, Li Y, Masselon CD, Ernst RK, Goodlett DR
Surface acoustic wave nebulization facilitating lipid mass spectrometric analysis.
Analytical Chemistry, 2012, 84(15): 6530-6537
2011
Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH and Rakwal R
Plant organelle proteomics: Collaborating for optimal cell function.
Mass Spectrometry Reviews, 2011, 211(30): 772-853
Beltran S, Gourbal B, Boissier J, Duval D, Kieffer-Jaquinod S, Pierce RJ, Grunau C, Theron A and Mitta G
Vertebrate host protective immunity drives genetic diversity and antigenic polymorphism in Schistosoma mansoni.
Journal of Evolutionary Biology, 2011, 24(3): 554-572
Baklouti F, Morinière M, Haj-Khélil A, Fénéant-Thibault M, Gruffat H, Couté Y, Ninot A, Guitton C and Delaunay J
Homozygous deletion of EPB41 genuine AUG-containing exons results in mRNA splicing defects, NMD activation and protein 4.1R complete deficiency in hereditary elliptocytosis.
Blood Cells, Molecules, and Diseases, 2011, 47(3): 158-165
Bounaix Morand du Puch C, Barbier E, Kraut A, Couté Y, Fuchs J, Buhot A, Livache T, Sève M, Favier A, Douki T, Gasparutto D, Sauvaigo S and Breton J
TOX4 and its binding partners recognize DNA adducts generated by platinum anticancer drugs.
Archives of Biochemistry and Biophysics, 2011, 507(2): 296-303
Court M, Selevsek N, Matondo M, Allory Y, Garin J, Masselon CD and Domon B
Toward a standardized urine proteome analysis methodology.
Proteomics, 2011, 11(6): 1160-1171
Crozat E, Hindre T, Kuhn L, Garin J, Lenski RE and Schneider D
Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K12 strains.
Journal of Bacteriology, 2011, 193(2): 429-440
Duperthuy M, Schmitt P, Garzón E, Caro A, Rosa RD, Le Roux F, Lautrédou-Audouy N, Got P, Romestand B, de Lorgeril J, Kieffer-Jaquinod S, Bachère E and Destoumieux-Garzón D
Use of OmpU for attachment and invasion of Crassostrea gigas immune cells by the oyster pathogen Vibrio splendidus.
Proceedings of the National Academy of Sciences USA, 2011, 108: 2993-2998
Guillaumond F, Boyer B, Becquet D, Guillen S, Kuhn L, Garin J, Belghazi M, Bosler O, Franc JL and François-Bellan AM
Chromatin remodeling as a mechanism for circadian prolactin transcription: Rhythmic NONO and SFPQ recruitment to HLTF.
FASEB J, 2011, 25: 2740-2756
Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH and Heazlewood JL
MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data.
Plant Physiology, 2011, 155(1): 259-270
Lebert D, Dupuis A, Garin J, Bruley C and Brun V
Production and use of stable isotope-labeled proteins for absolute quantitative proteomics.
Methods in Molecular Biology, 2011, 753: 93-115
Nguyen HM, Baudet M, Cuiné S, Adriano JM, Barthe D, Billon E, Bruley C, Beisson F, Peltier G, Ferro M and Li-Beisson Y
Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: With focus on proteins involved in lipid metabolism.
Proteomics, 2011, 11(21): 4266-4273
Nicolas E, Ramus C, Berthier S, Arlotto M, Bouamrani A, Lefebvre C, Morel F, Garin J, Ifrah N, Berger F, Cahn JY and Mossuz P
Expression of S100A8 in leukemic cells predicts poor survival in de novo AML patients.
Leukemia, 2011, 25: 57-65
Rolland D, Bouamrani A, Houlgatte R, Barbarat A, Ramus C, Arlotto M, Ballester B, Berger F, Felman P, Callet-Bauchu E, Baseggio L, Traverse-Glehen A, Brugière S, Garin J, Coiffier B, Berger F and Thieblemont C
Identification of proteomic signatures of mantle cell lymphoma, small lymphocytic lymphoma, and marginal zone lymphoma biopsies by surface enhanced laser desorption/ionization-time of flight mass spectrometry.
Leukemia & Lymphoma, 2011, 52: 648-658
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Villiers F, Ducruix C, Hugouvieux V, Jarno N, Ezan E, Garin J, Junot C and Bourguignon J
Investigating the plant response to cadmium exposure by proteomic and metabolomic approaches.
Proteomics, 2011, 11(9): 1650-1663
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Villiers F, Hugouvieux V, Leonhardt N, Vavasseur A, Junot C, Vandenbrouck Y and Bourguignon J |
Wang J, Emadali A, Le Bescont A, Callanan M, Rousseaux S and Khochbin S
Induced malignant genome reprogramming in somatic cells by testis-specific factors.
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2011, 1809(4-6): 221-225
2010
Bouamrani A, Ramus C, Gay E, Pelletier L, Cubizolles M, Brugiere S, Wion D, Berger F and Issartel JP
Increased phosphorylation of vimentin in noninfiltrative meningiomas.
PLoS One, 2010, 5(2): e9238
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Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O and Hakimi MA
A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii. PLoS Pathogens, 2010, 6(5): e1000920 |
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Dos Santos A, Court M, Thiers V, Sar S, Guettier C, Samuel D, Brechot C, Garin J, Demaugre F and Masselon CD
Identification of cellular targets in human intrahepatic cholangiocarcinoma using laser microdissection and AMT-tag proteomics.
Molecular and Cellular Proteomics, 2010, 9(9): 1991-2004
Ferro M, Brugiere S, Salvi D, Seigneurin-Berny D, Court M, Moyet L, Ramus C, Miras S, Mellal M, Le Gall S, Kieffer-Jaquinod S, Bruley C, Garin J, Joyard J, Masselon C and Rolland N
AT_CHLORO: A comprehensive chloroplast proteome database with subplastidiallocalization and curated information on envelope proteins.
Molecular and Cellular Proteomics, 2010, 9(1): 1063-1084
Gilquin B, Cannon BR, Hubstenberger A, Moulouel B, Falk E, Merle N, Assard N, Kieffer S, Rousseau D, Wilder PT, Weber DJ and Baudier J
The calcium-dependent interaction between S100B and the mitochondrial AAA-ATPase ATAD3A and the role of this complex in the cytoplasmic processing of ATAD3A.
Molecular and Cellular Biology, 2010, 30(11): 2724-2736
Graindorge M, Giustini C, Jacomin AC, Kraut A, Curien G and Matringe M
Identification of a plant gene encoding glutamate/aspartate-prephenate aminotransferase: The last homeless enzyme of aromatic amino acids biosynthesis.
Febs Letters, 2010, 584(20): 4357-4360
Guillaumot P, Luquain C, Malek M, Huber AL, Brugière S, Garin J, Grunwald D, Régnier D, Pétrilli V, Lefai E and Manié SN
Pdro, a protein associated with late endosomes and lysosomes and implicated in cellular cholesterol homeostasis.
PLoS One, 2010, 5(6): 1-9
Hacot S, Coute Y, Belin S, Albaret MA, Mertani HC, Sanchez JC, Rosa-Calatrava M and Diaz JJ
Isolation of nucleoli.
Current Protocols in Cell Biology, 2010, (SUPPL. 47): 3.36.31-33.36.10
Jacquot JF, Le Bail JL, Bardet M and Tabony J
Exposure of biological preparations to radiofrequency electromagnetic fields under low gravity.
Review of Scientific Instruments, 2010, 81(11): 115103
Joyard J, Ferro M, Masselon C, Seigneurin-Berny D, Salvi D, Garin J and Rolland N
Chloroplast proteomics highlights the subcellular compartmentation of lipid metabolism.
Progress in Lipid Research, 2010, 49(2): 128-158
Legrès L, Varna M, Bouhidel F, Leboeuf C, Ratajczak P, Martin N, Plassa L-F, Soliman H, Turpin E, Lehmann-Che J, de Thé H, Court M, Masselon C, Garin J, Janin A and Bertheau P
Principe et applications de la microdissection laser en histopathologie.
Revue Francophone des Laboratoires, 2010, 2010(418): 57-66
Mischak H, Allmaier G, Apweiler R, Attwood T, Baumann M, Benigni A, Bennett SE, Bischoff R, Bongcam-Rudloff E, Capasso G, Coon JJ, D'Haese P, Dominiczak AF, Dakna M, Dihazi H, Ehrich JH, Fernandez-Llama P, Fliser D, Frokiaer J, Garin J, Girolami M, Hancock WS, Haubitz M, Hochstrasser D, Holman RR, Ioannidis JP, Jankowski J, Julian BA, Klein JB, Kolch W, Luider T, Massy Z, Mattes WB, Molina F, Monsarrat B, Novak J, Peter K, Rossing P, Sanchez-Carbayo M, Schanstra JP, Semmes OJ, Spasovski G, Theodorescu D, Thongboonkerd V, Vanholder R, Veenstra TD, Weissinger E, Yamamoto T and Vlahou A
Recommendations for biomarker identification and qualification in clinical proteomics.
Science Transational Medicine, 2010, 2(46): 46ps42
Mischak H, Kolch W, Aivaliotis M, Bouyssie D, Court M, Dihazi H, Dihazi GH, Franke J, Garin J, de Peredo AG, Iphofer A, Jansch L, Lacroix C, Makridakis M, Masselon C, Metzger J, Monsarrat B, Mrug M, Norling M, Novak J, Pich A, Pitt A, Bongcam-Rudloff E, Siwy J, Suzuki H, Thongboonkerd V, Wang LS, Zoidakis J, Zurbig P, Schanstra JP and Vlahou A
Comprehensive human urine standards for comparability and standardization in clinical proteome analysis.
Proteomics Clinical Applications, 2010, 4(4): 464-478
Mone Y, Gourbal B, Duval D, Du Pasquier L, Kieffer-Jaquinod S and Mitta G
A large repertoire of parasite epitopes matched by a large repertoire of host immune receptors in an invertebrate host/parasite model.
PLoS Neglected Tropical Diseases, 2010, 4(9): e813
Nicolas A, Alazard-Dany N, Biollay C, Arata L, Jolinon N, Kuhn L, Ferro M, Weller SK, Epstein AL, Salvetti A and Greco A
Identification of rep-associated factors in Hsv-1-induced aav-2 replication compartments.
Journal of Virology, 2010, 84(17): 8871-8887
Pierrel F, Hamelin O, Douki T, Kieffer-Jaquinod S, Mühlenhoff U, Ozeir M, Lill R and Fontecave M
Involvement of mitochondrial ferredoxin and para-aminobenzoic acid in yeast coenzyme Q biosynthesis.
Chemistry & Biology, 2010, 17(5): 449-459
Tasset C, Bernoux M, Jauneau A, Pouzet C, Briere C, Kieffer-Jacquinod S, Rivas S, Marco Y and Deslandes L
Autoacetylation of the Ralstonia solanacearum effector PopP2 targets a lysine residue essential for RRS1-R-mediated immunity in Arabidopsis.
PLoS Pathogens, 2010, 6(11): e1001202
2009
Andreoletti P, Mouesca J-M, Gouet P, Jaquinod M, Capeillère-Blandin C and Jouve HM
Verdoheme formation in Proteus mirabilis catalase.
Biochimica et Biophysica Acta (BBA) - General Subjects, 2009, 1790(8): 741-753
Atteia A, Adrait A, Brugiere S, Tardif M, van Lis R, Deusch O, Dagan T, Kuhn L, Gontero B, Martin W, Garin J, Joyard J and Rolland N
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the {alpha}-proteobacterial mitochondrial ancestor.
Molecular Biology and Evolution, 2009, 26(7): 1533-1548
Bernay B, Gaillard MC, Guryca V, Emadali A, Kuhn L, Bertrand A, Detraz I, Carcenac C, Savasta M, Brouillet E, Garin J and Elalouf JM
Discovering new bioactive neuropeptides in the striatum secretome using in vivo microdialysis and versatile proteomics.
Molecular and Cellular Proteomics, 2009, 8(5): 946-958
Braun L, Cannella D, Pinheiro AM, Kieffer S, Belrhali H, Garin J and Hakimi MA
The small ubiquitin-like modifier (SUMO)-conjugating system of Toxoplasma gondii.
International Journal for Parasitology, 2009, 39(1): 81-90
Brun V, Masselon C, Garin J and Dupuis A
Isotope dilution strategies for absolute quantitative proteomics.
Journal of Proteomics, 2009, 72(5): 740-749
Chumpitazi BF, Bouillet L, Drouet MT, Kuhn L, Garin J, Zarski JP and Drouet C
Biological autoimmunity screening in hepatitis C patients by anti-HepG2 lysate and anti-heat shock protein 70.1 autoantibodies.
European Journal of Clinical Microbiology and Infectious Diseases, 2009, 28(2): 137-146
Dupierris V, Masselon C, Court M, Kieffer-Jaquinod S and Bruley C
A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa.
Bioinformatics, 2009, 25(15): 1980-1981
Emadali A and Gallagher-Gambarelli M
Quantitative proteomics by SILAC: Practicalities and perspectives for an evolving approach.
Medecine Sciences (Paris), 2009, 25(10): 835-842
Garin J and Jensen G
Techniques.
Current Opinion in Microbiology, 2009, 12(3): 282-284
Hennekinne JA, Brun V, De Buyser ML, Dupuis A, Ostyn A and Dragacci S
Innovative application of mass spectrometry for the characterization of staphylococcal enterotoxins involved in food poisoning outbreaks.
Applied and Environmental Microbiology, 2009, 75(3): 882-884
Joyard J, Ferro M, Masselon C, Seigneurin-Berny D, Salvi D, Garin J and Rolland N
Chloroplast proteomics and the compartmentation of plastidial isoprenoid biosynthetic pathways.
Molecular Plant, 2009, 2: 1154-1180
Kraut A, Marcellin M, Adrait A, Kieffer-Jaquinod S, Kuhn L, Louwagie M, Lebert D, Masselon CD, Dupuis A, Bruley C, Jaquinod M, Garin J and Gallagher-Gambarelli M
Peptide storage: Are you getting the best return on your investment? Defining optimal storage conditions for proteomics samples.
Journal of Proteome Research, 2009, 8(7): 3778-3785
Lehmann S, Roche S, Allory Y, Barthelaix A, Beaudeux JL, Berger F, Betsou F, Borg J, Dupuy A, Garin J, Quillard M, Lizard G, Peoc'H K, Riviere M and Ducoroy P
Preanalytical guidelines for clinical proteomics investigation of biological fluids.
Annales de Biologie Clinique, 2009, 67(6): 629-639
Li L, Sun CJ, Freeby S, Yee D, Kieffer-Jaquinod S, Guerrier L, Boschetti E and Lomas L
Protein sample treatment with peptide ligand library: Coverage and consistency.
Journal of Proteomics and Bioinformatics, 2009, 2.12: 485-494
Nicolau E, Kuhn L, Marchal R and Jouanneau Y
Proteomic investigation of enzymes involved in 2-ethylhexyl nitrate biodegradation in Mycobacterium austroafricanum IFP 2173.
Research in Microbiology, 2009, 160(10): 838-847
Polge C, Jaquinod M, Holzer F, Bourguignon J, Walling L and Brouquisse R
Evidence for the existence in Arabidopsis thaliana of the proteasome proteolytic pathway: Activation in response to cadmium.
Journal of Biological Chemistry, 2009, 284(51): 35412-35424
Rolland N, Atteia A, Decottignies P, Garin J, Hippler M, Kreimer G, Lemaire SD, Mittag M and Wagner V
Chlamydomonas proteomics.
Current Opinion in Microbiology, 2009, 12(3): 285-291
Rolland N, Ferro M, Seigneurin-Berny D, Garin J, Block MA and Joyard J
The Chloroplast envelope proteome and lipidome. In The Chloroplast - Interactions with the Environment (Anna-Stina Sandelius and Henrik Aronsson, eds.), Plant cell monograph series (David G Robinson, series editor). Springer Verlag, 2009, Vol.13 pp. 41-88
Sautel CF, Ortet P, Saksouk N, Kieffer S, Garin J, Bastien O and Hakimi MA
The histone methylase KMTox interacts with the redox-sensor peroxiredoxin-1 and targets genes involved in Toxoplasma gondii antioxidant defences.
Molecular Microbiology, 2009, 71(1): 212-226
Tarasova IA, Guryca V, Pridatchenko ML, Gorshkov AV, Kieffer-Jaquinod S, Evreinov VV, Masselon CD and Gorshkov MV
Standardization of retention time data for AMT tag proteomics database generation.
Journal of Chromatography B, 2009, 877(4): 433-440
Thomas D, Dauwalder O, Brun V, Badiou C, Ferry T, Etienne J, Vandenesch F and Lina G
Staphylococcus aureus superantigens elicit redundant and extensive human Vß patterns.
Infection Immunity, 2009, 77(5): 2043-2050
Trocme C, Marotte H, Baillet A, Pallot-Prades B, Garin J, Grange L, Miossec P, Tebib J, Berger F, Nissen MJ, Juvin R, Morel F and Gaudin P
Apolipoprotein A-I and platelet factor 4 are biomarkers for Infliximab response in rheumatoid arthritis.
Annals of the Rheumatic Diseases, 2009, 68(8): 1328-1333
2008
Bennett N, Letourneur F, Ragno M and Louwagie M
Sorting of the v-SNARE VAMP7 in Dictyostelium discoideum: A role for more than one Adaptor Protein (AP) complex.
Experimental Cell Research, 2008, 314(15): 2822-2833
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Bourguignon J and Jaquinod M |
Braun L, Travier L, Kieffer S, Musset K, Garin J, Mercier C and Cesbron-Delauw MF
Purification of Toxoplasma dense granule proteins reveals that they are in complexes throughout the secretory pathway.
Molecular and Biochemical Parasitology, 2008, 157(1): 13-21
Dupuis A, Hennekinne JA, Garin J and Brun V
Protein Standard Absolute Quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks.
Proteomics, 2008, 8(22): 4633-4636
Ferro M, Tardif M, Reguer E, Cahuzac R, Bruley C, Vermat T, Nugues E, Vigouroux M, Vandenbrouck Y, Garin J and Viari A
PepLine: A software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences.
Journal of Proteome Research, 2008, 7(5): 1873-1883
Ghannam A, Hammache D, Matias C, Louwagie M, Garin J and Gerlier D
High-density rafts preferentially host the complement activator measles virus F glycoprotein but not the regulators of complement activation.
Molecular Immunology, 2008, 45(11): 3036-3044
Guryca V, Kieffer-Jaquinod S, Garin J and Masselon CD
Prospects for monolithic nano-LC columns in shotgun proteomics.
Analytical and Bioanalytical Chemistry, 2008, 392(7-8): 1291-1297
Kieffer-Jaquinod S, Chapel A, Garin J and Journet A
Affinity purification of soluble lysosomal proteins for mass spectrometric identification.
Methods in Molecular Biology, 2008, 432: 243-258
Lafourcade C, Sobo K, Kieffer-Jaquinod S, Garin J and van der Goot FG
Regulation of the V-ATPase along the endocytic pathway occurs through reversible subunit association and membrane localization.
PLoS ONE, 2008, 3(7): e2758
Mahul-Mellier AL, Strappazzon F, Petiot A, Chatellard-Causse C, Torch S, Blot B, Freeman K, Kuhn L, Garin J, Verna JM, Fraboulet S and Sadoul R
Alix and ALG-2 are involved in TNF-R1 induced cell death.
Journal of Biological Chemistry, 2008, 283(50): 34954-34965
Masselon CD, Kieffer-Jaquinod S, Brugière S, Dupierris V and Garin J
Influence of mass resolution on species matching in accurate mass and retention time (AMT) tag proteomics experiments.
Rapid Communication in Mass Spectrometry, 2008, 22(7): 986-992
Menasche G, Menager MM, Lefebvre JM, Deutsch E, Athman R, Lambert N, Mahlaoui N, Court M, Garin J, Fischer A and de Saint Basile G
A newly identified isoform of Slp2a associates with Rab27a in cytotoxic T cells and participates to cytotoxic granule secretion.
Blood, 2008, 112(13): 5052-5062
Salvi D, Rolland N, Joyard J and Ferro M
Purification and proteomic analysis of chloroplasts and their sub-organellar compartments.
Methods in Molecular Biology, 2008, 432: 19-36
Salvi D, Rolland N, Joyard J and Ferro M
Assessment of organelle purity using antibodies and specific assays: The example of the chloroplast envelope.
Methods in Molecular Biology, 2008, 432: 345-356
Wicker-Planquart C, Foucher AE, Louwagie M, Britton RA and Jault JM
Interactions of an essential Bacillus subtilis GTPase, YsxC, with ribosomes.
Journal of Bacteriology, 2008, 190(2): 681-690
2007
Brun V, Dupuis A, Adrait A, Marcellin M, Thomas D, Court M, Vandenesch F and Garin J
Isotope-labeled protein standards: Toward absolute quantitative proteomics.
Molecular and Cellular Proteomics, 2007, 6(12): 2139-2149
Govin J, Escoffier E, Rousseaux S, Kuhn L, Ferro M, Thevenon J, Catena R, Davidson I, Garin J, Khochbin S and Caron C
Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis.
Journal of Cell Biology, 2007, 176(3): 283-294
Jaquinod M, Villiers F, Kieffer-Jaquinod S, Hugouvieux V, Bruley C, Garin J and Bourguignon J
A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture.
Molecular and Cellular Proteomics, 2007, 6(3): 394-412
Jaquinod M, Villiers F, Kieffer-Jaquinod S, Hugouvieux V, Bruley C, Garin J and Bourguignon J
A proteomics approach highlights a myriad of transporters in the Arabidopsis thaliana vacuolar membrane.
Plant Signaling & Behaviour, 2007, 2(5): 412-414
Jensen AG, Chemali M, Chapel A, Kieffer-Jaquinod S, Jadot M, Garin J and Journet A
Biochemical characterization and lysosomal localization of the mannose-6-phosphate protein p76 (hypothetical protein LOC196463).
Biochemical Journal, 2007, 402(3): 449-458
Lanquar V, Kuhn L, Lelievre F, Khafif M, Espagne C, Bruley C, Barbier-Brygoo H, Garin J and Thomine S
15N-Metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells.
Proteomics, 2007, 7(5):750-754
Lelong C, Aguiluz K, Luche S, Kuhn L, Garin J, Rabilloud T and Geiselmann J
The Crl-RpoS regulon of Escherichia coli.
Molecular and Cellular Proteomics, 2007, 6(4): 648-659
Lelong C, Rolland M, Louwagie M, Garin J and Geiselmann J
Mutual regulation of Crl and Fur in Escherichia coli W3110.
Molecular and Cellular Proteomics, 2007, 6(4): 660-668
Marmagne A, Ferro M, Meinnel T, Bruley C, Kuhn L, Garin J, Barbier-Brygoo H and Ephritikhine G
A high content in lipid-modified peripheral proteins and integral receptor kinases features the Arabidopsis plasma membrane proteome.
Molecular and Cellular Proteomics, 2007, 6(11): 1980-1996
Martelli A, Salin B, Dycke C, Louwagie M, Andrieu JP, Richaud P and Moulis JM
Folding and turnover of human iron regulatory protein 1 depend on its subcellular localization.
Febs Journal, 2007, 274(4): 1083-1092
Mossuz P, Bouamrani A, Brugière S, Arlotto M, Hermouet S, Lippert E, Laporte F, Girodon F, Dobo I, Praloran V, Garin J, Cahn JY and Berger F
Apolipoprotein A1: A new serum marker correlated to JAK2 V617F proportion at diagnosis in patients with polycythemia vera.
Proteomics. Clinical Applications, 2007, 1(12): 1605-1612
Paclet MH, Berthier S, Kuhn L, Garin J and Morel F
Regulation of phagocyte NADPH oxidase activity: Identification of two cytochrome b558 activation states.
FASEB Journal, 2007, 21(4): 1244-1255
Platel JC, Dupuis A, Boisseau S, Villaz M, Albrieux M and Brocard J
Synchrony of spontaneous calcium activity in mouse neocortex before synaptogenesis.
European Journal of Neuroscience, 2007, 25(4): 920-928
Sautel CF, Cannella D, Bastien O, Kieffer S, Aldebert D, Garin J, Tardieux I, Belrhali H and Hakimi MA
SET8-mediated methylations of histone H4 lysine 20 mark silent heterochromatic domains in apicomplexan genomes.
Molecular and Cellular Biology, 2007, 27(16): 5711-5724
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Tolleter D, Jaquinod M, Mangavel C, Passirani C, Saulnier P, Manon S, Teyssier E, Payet N, Avelange-Macherel MH and Macherel D |
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2006
Albrieux M, Platel JC, Dupuis A, Brocard J, Savasta M and Villaz M
Neuronal activity before synaptogenesis: Na+ channels, Ca2+ signalling and glutamatergic secretion or how to play the part when some famous actors are missing in the scene?
Medecine Sciences (Paris), 22(4): 359-361
Atteia A, van Lis R, Gelius-Dietrich G, Adrait A, Garin J, Joyard J, Rolland N and Martin W
Pyruvate formate-lyase and a novel route of eukaryotic ATP-synthesis in Chlamydomonas mitochondria.
Journal of Biological Chemistry, 281(15): 9909-9918
Boonen M, Hamer I, Boussac M, Delsaute AF, Flamion B, Garin J and Jadot M
Intracellular localization of p40, a protein identified in a preparation of lysosomal membranes.
Biochemical Journal, 395(1): 39-47
Brosson D, Kuhn L, Delbac F, Garin J, Vivares CP and Texier C
Proteomic analysis of the eukaryotic parasite Encephalitozoon cuniculi (microsporidia): A reference map for proteins expressed in late sporogonial stages.
Proteomics, 6(12): 3625-3635
Burchak ON, Jaquinod M, Cottin C, Mugherli L, Iwai K, Chatelain F and Balakirev MY
Chemoenzymatic ubiquitination of artificial substrates.
Chembiochem, 7(11): 1667-1669
Chaput N, Flament C, Viaud S, Taieb J, Roux S, Spatz A, Andre F, LePecq JB, Boussac M, Garin J, Amigorena S, Thery C and Zitvogel L
Dendritic cell derived-exosomes: Biology and clinical implementations.
Journal of Leukocyte Biology, 80(3): 471-478
Decca MB, Bosc C, Luche S, Brugiere S, Job D, Rabilloud T, Garin J and Hallak ME
Protein arginylation in rat brain cytosol: A proteomic analysis.
Neurochemical Research, 31(3): 401-409
Faure J, Lachenal G, Court M, Hirrlinger J, Chatellard-Causse C, Blot B, Grange J, Schoehn G, Goldberg Y, Boyer V, Kirchhoff F, Raposo G, Garin J and Sadoul R
Exosomes are released by cultured cortical neurones.
Molecular and Cellular Neuroscience, 31(4): 642-648
Govin J, Caron C, Escoffier E, Ferro M, Kuhn L, Rousseaux S, Eddy EM, Garin J and Khochbin S
Post-meiotic shifts in HSPA2/HSP70.2 chaperone activity during mouse spermatogenesis.
Journal of Biological Chemistry, 281(49): 37888-37892
Hanano A, Burcklen M, Flenet M, Ivancich A, Louwagie M, Garin J and Blee E
Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.
Journal of Biological Chemistry, 281(44): 33140-33151
Le Lay P, Isaure MP, Sarry JE, Kuhn L, Fayard B, Le Bail JL, Bastien O, Garin J, Roby C and Bourguignon J
Metabolomic, proteomic and biophysical analyses of Arabidopsis thaliana cells exposed to a caesium stress. Influence of potassium supply.
Biochimie, 88: 1533-1547
Levine A, Vannier F, Absalon C, Kuhn L, Jackson P, Scrivener E, Labas V, Vinh J, Courtney P, Garin J and Seror S J
Analysis of the dynamic Bacillus subtilis Ser/Thr/Tyr phosphoproteome implicated in a wide variety of cellular processes.
Proteomics, 6(7): 2157-2173
Oficjalska-Pham D, Harismendy O, Smagowicz WJ, Gonzalez de Peredo A, Boguta M, Sentenac A and Lefebvre O
General repression of RNA polymerase III transcription is triggered by protein phosphatase type 2A-mediated dephosphorylation of Maf1.
Molecular Cell, 22(5): 623
Pelletier L, Guillaumot P, Frêche B, Luquain C, Christiansen D, Brugiere S, Garin J and Manié S
Gamma-secretase-dependent proteolysis of CD44 promotes neoplastic transformation of rat fibroblastic cells.
Cancer Research, 66(7): 3681-3687
Pelosi L, Kuhn L, Guetta D, Garin J, Geiselmann J, Lenski R and Schneider D
Parallel changes in global protein profiles during long-term evolution in Escherichia coli.
Genetics, 173(4): 1851-1869
Peuvel-Fanget I, Polonais V, Brosson D, Texier C, Kuhn L, Peyret P, Vivares C and Delbac F
EnP1 and EnP2, two proteins associated with the Encephalitozoon cuniculi endospore, the chitin-rich inner layer of the microsporidian spore wall.
International Journal of Parasitology, 36(3): 309-318
Ramus C, de Peredo AG, Dahout C, Gallagher M and Garin J
An optimized strategy for ICAT quantification of membrane proteins.
Molecular and Cellular Proteomics, 5(1): 68-78
Rolland N, Ferro M, Ephritikhine G, Marmagne A, Ramus C, Brugière S, Salvi D, Seigneurin-Berny D, Bourguignon J, Barbier-Brygoo H, Joyard J and Garin J
A versatile method for deciphering plant membrane proteomes.
Journal of Experimental Botany, 57: 1579-1589
Sarry JE, Kuhn L, Ducruix C, Lafaye A, Junot C, Hugouvieux V, Jourdain A, Bastien O, Fievet J, Vailhen D, Amekraz B, Moulin C, Ezan E, Garin J and Bourguignon J
The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses.
Proteomics, 6(7): 2180-2198
Sarry JE, Kuhn L, Le Lay P, Garin J and Bourguignon J
Dynamics of Arabidopsis thaliana soluble proteome in response to different nutrient culture conditions.
Electrophoresis, 27(2): 495-507
Shen DK, Filopon D, Kuhn L, Polack B and Toussaint B
PsrA is a positive transcriptional regulator of the type III secretion system in Pseudomonas aeruginosa.
Infection Immunity, 74(2): 1121-1129
2005
Brosson D, Kuhn L, Prensier G, Vivares CP and Texier C
The putative chitin deacetylase of Encephalitozoon cuniculi: A surface protein implicated in microsporidian spore-wall formation.
FEMS Microbiol Lett., 247(1): 81-90
Dahout-Gonzalez C, Ramus C, Dassa EP, Dianoux AC and Brandolin G
Conformation-dependent swinging of the matrix loop m2 of the mitochondrial Saccharomyces cerevisiae ADP/ATP carrier.
Biochemistry, 44(49): 16310-16320
Gache V, Louwagie M, Garin J, Caudron N, Lafanechère L and Valiron O
Identification of proteins binding the native tubulin dimer.
Biochem. Biophys. Res. Commun, 327(1): 35-42
Michaille, JJ, Tili E, Calin GA, Garin J, Louwagie M and Croce CM
Cloning and characterization of cDNAs expressed during chick development and encoding different isoforms of a putative zic finger transcriptional regulator.
Biochimie, 87(11): 939-949
Moscatelli A, Scali M, Prescianotto-Baschong C, Ferro M, Garin J, Vignani R, Ciampolini F and Cresti M
A methionine synthase homolog is associated with secretory vesicles in tobacco pollen tubes.
Planta, 221(6): 776-89
Pastor A, Chabert J, Louwagie M, Garin J and Attree I
PscF is a major component of the Pseudomonas aeruginosa type III secretion needle.
FEMS Microbiology Letters, 253(1): 95-101
Rey P, Cuiné S, Eymery F, Garin J, Court M, Jacquot JP, Rouhier N and Broin M
Analysis of the proteins targeted by CDSP32, a plastidic thioredoxin participating in oxidative stress responses.
Plant J., 41(1): 31-42
Rumeau D, Becuwe-Linka N, Louwagie M, Garin J and Peltier G
New subunits NDH-M, -N, and –O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants.
Plant Cell, 17(1): 219-232
Saksouk N, Bhatti M, Kieffer S, Smith A, Musset K, Garin J, Sullivan W , Cesbron-Delauw MF and Hakimi M
Histone modifying complexes regulate gene expression pertinent to the differentiation of protozoan parasite Toxoplasma gondii.
Molecular and Cellular Biology, 25(23): 10301-10314
Sarrut N, Bouffet S, Mittler F, Constantin O, Combette P, Sudor J, Ricoul F, Vinet F, Garin J and Vauchier C
Enzymatic digestion and liquid chromatography in micro-pillar reactors. Hydrodynamic versus electroosmotic flow.
Proceeding of SPIE, 5718: 99-109
Vassilopoulos S, Thevenon D, Smida Rezgui S, Brocard J, Chapel A, Lacampagne A, Lunardi J, Dewaard M and Marty I
Triadins are not triad specific proteins: Two new skeletal muscle triadins possibly involved in the architecture of sarcoplasmic reticulum.
Journal of Biological Chemistry, 280(31): 28601-28609
Witkowska D, Mieszala M, Gamian A, Staniszewska M, Czarny A, Przondo-Mordarska A, Jaquinod M and Forest E
Major structural proteins of type 1 and type 3 Klebsiella fimbriae are effective protein carriers and immunogens in conjugates as revealed from their immunochemical characterization.
FEMS Immunology and Medical Microbiology, 45(2): 221-230
2004
Benaud C, Gentil BJ, Assard N, Court M, Garin J, Delphin C and Baudier J
AHNAK interaction with the annexin 2/S100A10 complex regulates cell membrane cytoarchitecture.
J. Cell. Bio.l, 164(1): 133-44
Bourges I, Ramus C, Mousson de Camaret B, Beugnot R, Remacle C, Cardol P, Hofhaus G and Issartel JP
Structural organization of mitochondrial human complex I: Role of the ND4 and ND5 mitochondria-encoded subunits and interaction with prohibitin.
Biochem J., 383(Pt. 3): 491-9
Brugiere S, Kowalski S, Ferro M, Seigneurin-Berny D, Miras S, Salvi D, Ravanel S, d'Herin P, Garin J, Bourguignon J, Joyard J and Rolland N
The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions.
Phytochemistry, 65(12): 1693-707
Demaneche S, Meyer C, Micoud J, Louwagie M, Willison JC and Jouanneau Y
Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons.
Appl. Environ. Microbiol., 70(11): 6714-25
Ephritikhine G, Ferro M and Rolland N
Plant membrane proteomics.
Plant Physiol. Biochem., 42(12): 943-62
Journet A and Ferro M
The potentials of MS-based subproteomic approaches in medical science: The case of lysosomes and breast cancer.
Mass. Spectrom. Rev., 23(6): 393-442
Lemaitre G, Lamartine J, Pitaval A, Vaigot P, Garin J, Bouet S, Petat C, Soularue P, Gidrol X, Martin MT and Waksman G
Expression profiling of genes and proteins in HaCaT keratinocytes: Proliferating versus differentiated state.
J. Cell. Biochem., 93(5): 1048-62
Marmagne A, Rouet MA, Ferro M, Rolland N, Alcon C, Joyard J, Garin J, Barbier-Brygoo H and Ephritikhine G
Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome.
Mol. Cell Proteomics, 3(7): 675-91
Van Der Rest B, Rolland N, Boisson AM, Ferro M, Bligny R and Douce R
Identification and characterization of plant glycerophosphodiester phosphodiesterase.
Biochem. J., 379(Pt 3): 601-7
2003
Berthier S, Paclet MH, Lerouge S, Roux F, Vergnaud S, Coleman AW and Morel F
Changing the conformation state of cytochrome b558 initiates NADPH oxidase activation: MRP8/MRP14 regulation.
J. Biol. Chem, 278(28): 25499-508
Ferro M, Salvi D, Brugière S, Miras D, Kowalski S, Louwagie M, Garin J, Joyard J and Rolland N
Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.
Mol. Cell. Proteomics, 2(5): 325-45
Krivobok S, Kuony S, Meyer C, Louwagie M, Willison JC and Jouanneau Y
Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: Evidence for two ring-hydroxylating dioxygenases.
J. Bacteriol., 185(13): 3828-41
Lemercier C, Legube G, Caron C, Louwagie M, Garin J, Trouche D and Khochbin S
Tip60 acetyltransferase activity is controlled by phosphorylation.
J. Biol. Chem, 278(7): 4713-8
Mollinari C, Reynaud C, Martineau-Thuillier S, Monier S, Kieffer S, Garin J, Andreassen PR, Boulet A, Goud B, Kleman JP and Margolis RL
The mammalian passenger protein TD-60 is an RCC1 family member with an essential role in prometaphase to metaphase progression.
Dev. Cell, 5(2): 295-307
Poinssot B, Vandelle E, Bentejac M, Adrian M, Levis C, Brygoo Y, Garin J, Sicilia F, Coutos-Thevenot P and Pugin A
The endopolygalacturonase 1 from Botrytis cinerea activates grapevine defense reactions unrelated to its enzymatic activity.
Mol. Plant Microbe Interact, 16(6): 553-64
Prevot D, Decimo D, Herbreteau CH, Roux F, Garin J, Darlix JL and Ohlmann T
Characterization of a novel RNA-binding region of eIF4GI critical for ribosomal scanning.
EMBO J, 22(8): 1909-21
Rolland N, Ferro M, Seigneurin-Berny D, Garin J, Douce R and Joyard J
Proteomics of chloroplast envelope membranes.
Photosynthesis Res., 78(3): 205-230
Siaut M, Zaros C, Levivier E, Ferri ML, Court M, Werner M, Callebaut I, Thuriaux P, Sentenac A and Conesa C
An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP.
Mol. Cell. Biol, 23(1): 195-205
Starita-Geribaldi M, Roux F, Garin J, Chevallier D, Fenichel P and Pointis G
Development of narrow immobilized pH gradients covering one pH unit for human seminal plasma proteomic analysis.
Proteomics, 3(8): 1611-9
Van Niel G, Mallegol J, Bevilacqua C, Candalh C, Brugiere S, Tomaskovic-Crook E, Heath JK, Cerf-Bensussan N and Heyman M
Intestinal epithelial exosomes carry MHC class II/peptides able to inform the immune system in mice.
Gut, 52(12): 1690-7
2002
Bardel J, Louwagie M, Jaquinod M, Jourdain A, Luche S, Rabilloud T, Macherel D, Garin J and Bourguignon J
A survey of the plant mitochondrial proteome in relation to development.
Proteomics, 2: 880-898
Bebien M, Lagniel G, Garin J, Touati D, Vermeglio A and Labarre J
Involvment of superoxide dismutases in th response of Escherichia coli to selenium oxides.
J. Bacteriol., 184: 1556-1564
Bogdanovic A, Bennett N, Kieffer S, Louwagie M, Morio T, Garin J, Satre M and Bruckert F
Syntaxin 7, Syntaxin 8, Vti1 and VAMP7 form an active SNARE complex for early macropinocytic compartment fusion in Dictyostelium discoideum.
Biochem. J., 368(Pt 1): 29-39
Chapal N, Laplanche M, Ribes G, Pau B, Garin J and Petit P
Pharmaco-proteomic analysis: Application of proteomic analysis to the discovery and development of new drugs.
J. Soc. Biol., 196(4): 317-22
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Ferro M, Salvi D, Rivière-Rolland H, Vermat T, Seigneurin-Berny D, Grunwald D, Garin J, Joyard J and Rolland N
Integral membrane proteins of the chloroplast envelope: Identification and subcellular localization of new transporters. Proceedings of the National Academy of Sciences USA, 2002, 99: 11487-11492 |
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Gauthier L, Rossi B, Roux F, Termine E and Schiff C
Galectin-1 is a stromal cell ligand of the pre-B cell receptor (BCR) implicated in synapse formation between pre-B and stromal cells and in pre-BCR triggering.
Proc. Natl. Acad. Sci. USA, 99: 13014-13019
Guzman-Verri C, Manterola L, Sola-Landa A, Parra A, Cloeckaert A, Garin J, Gorvel JP, Moriyon I, Moreno E and Lopez-Goni I
The two-component system BvrR/BvrS essential for Brucella abortus virulence regulates the expression of outer membrane proteins with counterparts in members of the Rhizobiaceae.
Proc. Natl. Acad. Sci. USA, 99(19): 12375-80
Journet A, Chapel A, Kieffer S, Roux F and Garin J
Proteomic analysis of human lysosomes: Application to monocytic and breast cancer cells.
Proteomics, 2: 1026-1040
Magnard C, Bachelier R, Vincent A, Jaquinod M, Kieffer S, Lenoir GM and Venezia ND
BRCA1 interacts with acetyl-CoA carboxylase through its tandem of BRCT domains.
Oncogene, 21(44): 6729-39
Mbele GO, Deloulme JC, Gentil BJ, Delphin C, Ferro M, Garin J, Takahashi M and Baudier J
The zinc- and calcium-binding S100B interacts and co-localizes with IQGAP1 during dynamic rearrangement of cell membranes.
J. Biol. Chem., 277(51): 49998-50007
Miras S, Salvi D, Ferro M, Grunwald D, Garin J, Joyard J and Rolland N
Non-canonical transit peptide for import into the chloroplast.
J. Biol. Chem., 277(49): 47770-8
Ohlmann T, Prevot D, Decimo D, Roux F, Garin J, Morley SJ and Darlix JL
In vitro cleavage of eIF4GI but not eIFGII by HIV-1 protease and its effects on translation in the rabbit reticulocyte lysate system.
J. Mol. Biol., 318: 9-20Pizzaro-Cerda J, Jonquieres R, Gouin E, Vandekerckove J, Garin J and Cossart P
Distinct protein patterns associated with Listeria monocytogenes InlA- or InlB- phagosomes.
Cell. Microbiol., 4: 101-115
2001
Dermine J.F, Duclos S, Garin J, St-Louis F, Rea S, Parton R and Desjardins M
Flotillin-1-enriched lipid raft domains accumulate on maturing phagososmes.
J. Biol. Chem., 276: 18507-18512
Garin J, Diez R, Kieffer S, Dermine JF, Duclos S, Gagnon E, Sadoul R, Rondeau C and Desjardins M
The phagocyte proteome: Insight into phagocyte functions.
J. Cell Biol., 152: 165-180
Garin J, Ferro M, Rolland N and Joyard J
Stratégies en protéomique : outils, limites et développements. Génomique fonctionnelle chez les végétaux : du gène à la fonction. J. J. H. Barbier-Brygoo, Morot-Gaudry J.F. & Gaymard F, 2001, 39-48
Garin J, Ferro M, Rolland N, Riviere-Rolland H, Viari V and Joyard J
Méthodes de la protéomique, limites et développements technologiques. Exemple des protéines membranaires végétales.
C. R. Acad. Agric. Fr., 2001, 87: 9-20
Gentil B, Delphin C, Ouengue G, Deloulme J.C, Ferro M, Garin J and Baudier J
The giant protein AHNAK is a specific target for the calcium and zinc-binding S100B protein. Potential implication for Ca2+ homeostasis regulation by S100B.
J. Biol. Chem., 276: 23253-23261
Morris-Desbois C, Rety S, Ferro M, Garin J and Jalinot P
The human protein HSPC021 interacts with Int-6 and is associated with eukaryotic translation initiation factor 3.
J. Biol. Chem., 276: 45988-45995
Prouzet-Mauleon V, Monribot-Espagne C, Boucherie H, Lagniel G, Lopez S, Labarre J, Garin J and Lauquin GJ
Identification in S. cerevisiae of a new stable variant of alkyl hydroperoxide reductase 1 (Ahp1) induced by oxidative stress.
J. Biol. Chem., 277: 4823-4830
Rampazzo P, Biasiolo A, Garin J, Rosato A, Betterle C, Ruffatti A and Pengo V
Some patients with antiphospholipid syndrome express hitherto undescribed antibodies to cardiolipin-binding proteins.
Thromb. Haemost., 85: 57-62
Seigneurin-Berny D, Verdel A, Curtet S, Lemercier C, Garin J, Rousseaux S and Khochbin S
Identification of components of the murine histone deacetylase 6 complex: Link between acetylation and ubiquitination signaling pathways.
Mol. Cell. Biol., 23: 8035-8044
Starita-Geribaldi M, Poggioli S, Zucchini M, Garin J, Chevallier D, Fenichel P and Pointis G
Mapping of seminal plasma proteins by two-dimensional gel electrophoresis in men with normal and impaired spermatogenesis.
Mol. Hum. Reprod., 8: 715-722
Théry C, Boussac M, Véron P, Ricciardi-Castagnoli, P, Raposo G, Garin J and Amigorena S
Proteomic analysis of dendritic cell-derived exosomes, a secreted subcellular compartment distinct from apoptotic vesicles.
J. Immunol., 166: 7309-7318
Van Niel, G, Raposo, G, Candalh, C, Boussac, M, Hershberg, R, Cerf-bensussan, N and Heyman M
Intestinal epithelial cells secrete exosome-like vesicles.
Gastroenterology, 121: 337-349
2000
Boutonnat J, Ducros V, Pinel C, Kieffer S, Favier A, Garin J and Seigneurin D
Identification of amylase crystalloids in cystic lesions of the parotid gland.
Acta Cytol., 44: 51-56
Boussac M and Garin J
Calcium-dependent secretion in human neutrophils: A proteomic approach.
Electrophoresis, 267: 2062-2070
Dianoux AC, Noel F, Fiore C, Trezeguet V, Kieffer S, Jaquinod M, Lauquin GJ and Brandolin G
Two distinct regions of the yeast mitochondrial ADP/ATP carrier are photolabeled by a new ADP analogue: 2-azido-3'-O-naphthoyl-[beta-32P]ADP. Identification of the binding segments by mass spectrometry.
Biochemistry, 39: 11477-87
Duclos S, Diez R, Garin J, Papadopoulou B, Descoteaux A, Stenmark H and Desjardins M
Rab5 regulates the kiss and run fusion between phagosomes and endosomes and the acquisition of phagosome leishmanicidal properties in RAW 264.7 macrophages.
J. Cell. Sci., 113: 3531-41
Ferro M, Lorquin J, Ba S, Sanon K, Prome JC and Boivin C
Bradyrhizobium sp. strains that nodulate the leguminous tree Acacia albida produce fucosylated and partially sulfated nod factors.
Appl. Environ. Microbiol., 66: 5078-82
Ferro M, Seigneurin D, Rolland N, Chapel A, Salvi D, Garin J and Joyard J
Organic solvent extraction as a versatile procedure to identify hydrophobic chloroplast proteins.
Electrophoresis, 21: 3517-3526
Gaudin P, Trocme C, Berthier S, Kieffer S, Boutonnat J, Lamy C, Surla A, Garin J and Morel F
TIMP-1/MMP-9 imbalance in an EBV-immortalized B lymphocyte cellular model: Evidence for multifunctional properties.
Biochim. Biophys. Acta, 1499: 19-33
Gueguen V, Macherel D, Jaquinod M, Douce R and Bourguignon J
Fatty acid and lipoic acid biosynthesis in high plant mitochondria.
Journal of Biological Chemistry, 2000, 275(7): 5016-5025
Journet A, Chapel A, Kieffer S, Louwagie M, Luche S and Garin J
Towards a human repertoire of monocytic lysosomal proteins.
Electrophoresis, 21: 3411-3419
Nosjean O, Ferro M, Coge F, Beauverger P, Henlin JM, Lefoulon F, Fauchere JL, Delagrange P, Canet E and Boutin JA
Identification of the melatonin-binding site MT3 as the quinone reductase 2.
J. Biol. Chem., 275: 31311-7
Santoni V, Kieffer S, Desclaux D, Masson F and Rabilloud T
Membrane proteomics: Use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties.
Electrophoresis, 21: 3329-44
Weidenhaupt M, Bruckert F, Louwagie M, Garin J and Satre M
Functional and molecular identification of novel members of the ubiquitous membrane fusion proteins alpha and gamma SNAP families in Dictyostelium discoideum.
Eur. J. Biochem., 267: 2062-2070