Direction des sciences du vivant

Publications  - 2004

• Department of plant biology and environmental microbiology (SBVME)
• Department of biochemistry and nuclear toxicology (SBTN)

1. Achouak W, Conrod S, Cohen V, Heulin T.  (2004). Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy. Mol Plant Microbe Interact. 17, 872-879.

2. Aida M, Beis D, Heidstra R, Willemsen V, Blilou I, Galinha C, Nussaume L, Noh YS, Amasino R, Scheres B.  (2004). The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell. 119, 109-120.

3. Alric J, Tsukatani Y, Yoshida M, Matsuura K, Shimada K, Hienerwadel R, Schoepp-Cothenet B, Nitschke W, Nagashima KV, Vermeglio A.  (2004). Structural and functional characterization of the unusual triheme cytochrome bound to the reaction center of rhodovulum sulfidophilum. J Biol Chem. 279, 26090-26097.

4. Alric J, Yoshida M, Nagashima KV, Hienerwadel R, Parot P, Vermeglio A, Chen SW, Pellequer JL.  (2004). Two distinct binding sites for HiPIP and cytochrome c on the reaction center-bound cytochrome of Rubrivivax gelatinosus. J Biol Chem. 279, 32545-32553.

5. Alric J, Cuni A, Maki H, Nagashima KV, Vermeglio A, Rappaport F.  (2004). Electrostatic interaction between redox cofactors in photosynthetic reaction centers. J Biol Chem. 279, 47849-47855.

6. Ashraf M, Hasnain S, Berge O, Mahmood T.  (2004). Inoculating wheat seedlings with exopolysaccharide-producing bacteria restricts sodium uptake and stimulates plant growth under salt stress Biol Fert Soils. 40, 157-162.

7. Baroli I, Gutman BL, Ledford HK, Shin JW, Chin BL, Havaux M, Niyogi KK.  (2004). Photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas. J Biol Chem. 279, 6337-6344.

8. Benzerara K, Barakat M, Menguy N, Guyot F, De Luca G, Audrain C, Heulin T.  (2004). Experimental colonization and alteration of orthopyroxene by the pleomorphic bacteria Ramlibacter tataouinensis. Geomicrobiol J. 21, 341-349.

9. Benzerara K, Menguy N, Guyot F, Skouri F, De Luca G, Barakat M, Heulin T.  (2004). Biologically controlled precipitation of calcium phosphate by Ramlibacter tataouinensis Earth Planet Sci Lett. 228, 439-449.

10. Berne C, Montjarret B, Guountti Y, Garcia D.  (2004). Tributyl phosphate degradation by Serratia odorifera. Biotechnol Lett. 26, 681-686.

11. Berthomieu C, Hienerwadel R.  (2004). Vibrational spectroscopy to study the properties of redox-active tyrosines in photosystem II and other proteins. Biochim Biophys Acta  Bioenergetics  1707, 51-66.

12. Boussac A, Rappaport F, Carrier P, Verbavatz JM, Gobin R, Kirilovsky D, Rutherford AW, Sugiura M.  (2004). Biosynthetic Ca2+/Sr2+ exchange in the photosystem II oxygen evolving enzyme of Thermosynechococcus elongatus. J Biol Chem. 279, 22809-22819.

13. Buttner D, Gurlebeck D, Noel LD, Bonas U.  (2004). HpaB from Xanthomonas campestris pv. vesicatoria acts as an exit control protein in type III-dependent protein secretion. Mol Microbiol. 54, 755-768.

14. Caffarri S, Croce R, Cattivelli L, Bassi R.  (2004). A look within LHCII: differential analysis of the Lhcb1-3 complexes building the major trimeric antenna complex of higher-plant photosynthesis. Biochemistry. 43, 9467-9476.

15. Cellini F, Chesson A, Colquhoun I, Constable A, Davies HV, Engel KH, Gatehouse AM, Karenlampi S, Kok EJ, Leguay JJ, Lehesranta S, Noteborn HP, Pedersen J, Smith M.  (2004). Unintended effects and their detection in genetically modified crops. Food Chem Toxicol. 42, 1089-1125.

16. Cournac L, Guedeney G, Peltier G, Vignais PM.(2004). Sustained Photoevolution of Molecular Hydrogen in a Mutant of Synechocystis sp. Strain PCC 6803 Deficient in the Type I NADPH-Dehydrogenase Complex. J Bacteriol. 186, 1737-1746.

17. Cousson A.  (2004). Pharmacological evidence for a putative mediation of cyclic GMP and cytosolic Ca2+ within auxin-induced de novo root formation in the monocot plant Commelina communis (L.) Plant Sci. 166, 1117-1124.

18. Croce R, Morosinotto T, Ihalainen JA, Chojnicka A, Breton J, Dekker JP, van Grondelle R, Bassi R.  (2004). Origin of the 701-nm Fluorescence Emission of the Lhca2 Subunit of Higher Plant Photosystem I. J Biol Chem. 279, 48543-48549.

19. Culligan K, Tissier A, Britt A.  (2004). ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana. Plant Cell. 16, 1091-1109.

20. Cuni A, Xiong L, Sayre R, Rappaport F, Lavergne J.  (2004). Modification of the pheophytin midpoint potential in photosystem II: Modulation of the quantum yield of charge separation and of charge recombination pathways Phys Chem Chem Phys. 6, 4825-4831.

21. D'Autreaux B, Horner O, Oddou JL, Jeandey C, Gambarelli S, Berthomieu C, Latour JM, Michaud-Soret I.  (2004). Spectroscopic Description of the Two Nitrosyl-Iron Complexes Responsible for Fur Inhibition by Nitric Oxide. J Am Chem Soc. 126, 6005-6016.

22. Della Mea M, Di Sandro A, Dondini L, Del Duca S, Vantini F, Bergamini C, Bassi R, Serafini-Fracassini D.  (2004). A Zea mays 39-kDa thylakoid transglutaminase catalyses the modification by polyamines of light-harvesting complex II in a light-dependent way. Planta. 219, 754-764.

23. Diner BA, Bautista JA, Nixon PJ, Berthomieu C, Hienerwadel R, Britt RD, Vermaas WFJ, Chisholm DA.  (2004). Coordination of proton and electron transfer from the redox-active tyrosine, Y-Z, of Photosystem II and examination of the electrostatic influence of oxidized tyrosine, Y-D(center dot)(H+) Phys Chem Chem Phys. 6, 4844-4850.

24. Dufourmantel N, Pelissier B, Garcon F, Peltier G, Ferullo JM, Tissot G.  (2004). Generation of fertile transplastomic soybean. Plant Mol Biol. 55, 479-489.

25. Dupeyrat F, Vidaud C, Lorphelin A, Berthomieu C.  (2004). Long distance charge redistribution upon Cu,Zn-superoxide dismutase reduction: Significance for dismutase function. J Biol Chem. 279, 48091-48101.

26. Frangioni B, Arnoux P, Sabaty M, Pignol D, Bertrand P, Guigliarelli B, Leger C.  (2004). In Rhodobacter sphaeroides respiratory nitrate reductase, the kinetics of substrate binding favors intramolecular electron transfer. J Am Chem Soc. 126, 1328-1329.

27. Gales G, Libert MF, Sellier R, Cournac L, Chapon V, Heulin T.  (2004). Molecular hydrogen from water radiolysis as an energy source for bacterial growth in a basin containing irradiating waste. FEMS Microbiol Lett. 240, 155-162.

28. Garcia O, Bouige P, Forestier C, Dassa E.  (2004). Inventory and Comparative Analysis of Rice and Arabidopsis ATP-binding Cassette (ABC) Systems. J Mol Biol. 343, 249-265.

29. Gardan L, Christen R, Achouak W, Prior P.  (2004). Erwinia papayae sp nov., a pathogen of papaya (Carica papaya). Int J Syst Evol Micr. 54, 107-113.

30. Giraud E, Hannibal L, Fardoux J, Jaubert M, Jourand P, Dreyfus B, Sturgis JN, Vermeglio A.  (2004). Two distinct crt gene clusters for two different functional classes of carotenoid in Bradyrhizobium. J Biol Chem. 279, 15076-15083.

31. Giraud E, Zappa S, Jaubert M, Hannibal L, Fardoux J, Adriano JM, Bouyer P, Genty B, Pignol D, Vermeglio A.  (2004). Bacteriophytochrome and regulation of the synthesis of the photosynthetic apparatus in Rhodopseudomonas palustris: pitfalls of using laboratory strains. Photochem Photobiol Sci. 3, 587-591.

32. Gravot A, Lieutaud A, Verret F, Auroy P, Vavasseur A, Richaud P.  (2004). AtHMA3, a plant P(1B)-ATPase, functions as a Cd/Pb transporter in yeast. FEBS Lett. 561, 22-28.

33. Hamann T, Osborne E, Youngs HL, Misson J, Nussaume L, Somerville C.  (2004). Global expression analysis of CESA and CSL genes in Arabidopsis Cellulose. 11, 279-286.

34. Havaux M, Dall'Osto L, Cuine S, Giuliano G, Bassi R.  (2004). The effect of zeaxanthin as the only xanthophyll on the structure and function of the photosynthetic apparatus in Arabidopsis thaliana. J Biol Chem. 279, 13878-13888.

35. Jaubert M, Zappa S, Fardoux J, Adriano JM, Hannibal L, Elsen S, Lavergne J, Vermeglio A, Giraud E, Pignol D.  (2004). Light and redox control of photosynthesis gene expression in bradyrhizobium: Dual roles of two PpsR. J Biol Chem. 279, 44407-44416.

36. Kobayashi K, Sarrobert C, Ares X, Rivero MM, Maldonado S, Robaglia C, Mentaberry A.  (2004). Over-expression of potato virus X TGBp1 movement protein in transgenic tobacco plants causes developmental and metabolic alterations. Plant Physiol Biochem. 42, 731-738.

37. Korach-Andre M, Roth H, Barnoud D, Pean M, Peronnet F, Leverve X.  (2004). Glucose appearance in the peripheral circulation and liver glucose output in men after a large 13C starch meal. Am J Clin Nutrit. 80, 881-886.

38. Laurent S, Forchhammer K, Gonzalez L, Heulin T, Zhang CC, Bedu S.  (2004). Cell-type specific modification of PII is involved in the regulation of nitrogen metabolism in the cyanobacterium Anabaena PCC 7120. FEBS Lett. 576, 261-265.

39. Li XP, Gilmore AM, Caffarri S, Bassi R, Golan T, Kramer D, Niyogi KK.  (2004). Regulation of photosynthetic light harvesting involves intrathylakoid lumen pH sensing by the PsbS protein. J Biol Chem. 279, 22866-22874.

40. Lindberg P, Lindblad P, Cournac L.  (2004). Gas exchange in the filamentous cyanobacterium Nostoc punctiforme strain ATCC 29133 and Its hydrogenase-deficient mutant strain NHM5. Appl Environ Microbiol. 70, 2137-2145.

41. Menand B, Meyer C, Robaglia C.  (2004). Plant growth and the TOR pathway Curr Top Microbiol Immunol. 279, 97-113.

42. Misson J, Thibaud MC, Bechtold N, Raghothama K, Nussaume L.  (2004). Transcriptional regulation and functional properties of Arabidopsis Pht1;4, a high affinity transporter contributing greatly to phosphate uptake in phosphate deprived plants. Plant Mol Biol. 55, 727-741.

43. Montillet JL, Cacas JL, Garnier L, Montane MH, Douki T, Bessoule JJ, Polkowska-Kowalczyk L, Maciejewska U, Agnel JP, Vial A, Triantaphylides C.  (2004). The upstream oxylipin profile of Arabidopsis thaliana: a tool to scan for oxidative stresses. Plant J. 40, 439-451.

44. Palacios MA, Caffarri S, Bassi R, van Grondelle R, van Amerongen H.  (2004). Stark effect measurements on monomers and trimers of reconstituted light-harvesting complex II of plants. Biochim Biophys Acta Bioenergetics. 1656, 177-188.

45. Robaglia C, Menand B, Lei Y, Sormani R, Nicolai M, Gery C, Teoule E, Deprost D, Meyer C.  (2004). Plant growth: the translational connection. Biochem Soc Trans. 32, 581-584.

46. Rollin-Genetet F, Berthomieu C, Davin AH, Quemeneur E.  (2004). Escherichia coli thioredoxin inhibition by cadmium - Two mutually exclusive binding sites involving Cys32 and Asp26. Eur J Biochem. 271, 1299-1309.

47. Rorat T, Grygorowicz WJ, Irzykowski W, Rey P.  (2004). Expression of KS-type dehydrins is primarily regulated by factors related to organ type and leaf developmental stage during vegetative growth. Planta. 218, 878-885.

48. Rumeau D, Becuwe-Linka N, Beyly A, Carrier P, Cuine S, Genty B, Medgyesy P, Horvath E, Peltier G.  (2004). Increased zinc content in transplastomic tobacco plants expressing a polyhistidine-tagged Rubisco large subunit Plant Biotechnol J. 2, 389-399.

49. Sarret G, Balesdent J, Bouziri L, Garnier JM, Marcus MA, Geoffroy N, Panfili F, Manceau A.  (2004). Zn speciation in the organic horizon of a contaminated soil by micro-X-ray fluorescence, micro- and powder-EXAFS spectroscopy, and isotopic dilution. Environ Sci Technol. 38, 2792-2801.

50. Soussana JF, Loiseau P, Vuichard N, Ceschia E, Balesdent J, Chevallier T, Arrouays D.  (2004). Carbon cycling and sequestration opportunities in temperate grasslands Soil Use Managt. 20, 219-230.

51. Suhita D, Raghavendra AS, Kwak JM, Vavasseur A.  (2004). Cytoplasmic Alkalization Precedes Reactive Oxygen Species Production during Methyl Jasmonate- and Abscisic Acid-Induced Stomatal Closure. Plant Physiol. 134, 1536-1545.

52. Thibaud MC, Gineste S, Nussaume L, Robaglia C.  (2004). Sucrose increases pathogenesis-related PR-2 gene expression in Arabidopsis thaliana through an SA-dependent but NPR1-independent signaling pathway. Plant Physiol Biochem. 42, 81-88.

53. Touraine B, Boutin JP, Marion-Poll A, Briat JF, Peltier G, Lobreaux S.  (2004). Nfu2: a scaffold protein required for [4Fe-4S] and ferredoxin iron-sulphur cluster assembly in Arabidopsis chloroplasts. Plant J. 40, 101-111.

54. Vaucheret H, Vazquez F, Crete P, Bartel DP.  (2004). The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18, 1187-1197.

55. Vazquez F, Gasciolli V, Crete P, Vaucheret H.  (2004). The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol. 14, 346-351.

56. Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crete P.  (2004). Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Biol Cell. 16, 69-79.

57. Verret F, Gravot A, Auroy P, Leonhardt N, David P, Nussaume L, Vavasseur A, Richaud P.  (2004). Overexpression of AtHMA4 enhances root-to-shoot translocation of zinc and cadmium and plant metal tolerance FEBS Lett. 576, 306-312.

58. Witte CP, Noel LD, Gielbert J, Parker JE, Romeis T.  (2004). Rapid one-step protein purification from plant material using the eight-amino acid StrepII epitope. Plant Mol Biol. 55, 135-147.