Annotation
- Annotation
- Identified tags
| TGACTCCCTC count=756 | |
| M11944 | Trailer TTCTGG, Position 69 Mouse serum induced RNA with partial B2 repeat and consensus of the |
| M30250 | Trailer TTCTGG, Position 518 Mouse RNA polymerase III-associated B2 repeat. |
| M11284 | Trailer TTCTGG, Position 1224 Mouse MHC class I Qa-Tla mRNA |
| L00606 | Trailer TTCTGG, Position 1217 Mus musculus MHC class I Qa-1a antigen mRNA |
| M31450 | Trailer TTCTGG, Position 4 Mouse B2 repetitive sequence mRNA |
| M31447 | Trailer TTCTGG, Position 45 Mouse B2 repetitive sequence mRNA |
| M31446 | Trailer TTCTGG, Position 66 Mouse B2 repetitive sequence mRNA |
| M31444 | Trailer TTCTGG, Position 70 Mouse B2 repetitive sequence mRNA |
| M36411 | Trailer TTCTGG, Position 1149 Mouse Mpv17 mRNA |
| U56773 | Trailer TTCTGG, Position 2438 Mus musculus pelle-like protein kinase mRNA |
| AF103876 | Trailer TTCTGG, Position 2698 Mus musculus pelle-like protein kinase mRNA |
| M36402 | Trailer TTCTGG, Position 86 Mouse B2 repetitive sequence mRNA. |
| GAGAGGGCAA count=128 | |
| X15962 | Trailer ACCACG, Position 339 Mouse mRNA for ribosomal protein S12. |
| AAAGCCCGGA count=109 | |
| X73829 | Trailer AAGGCA, Position 609 M.musculus mRNA for ribosomal protein S8. |
| AGTCTTTAAA count=107 | |
| M62952 | Trailer ATAAAA, Position 638 Mus musculus ribosomal protein L19 |
| AATGCCCTCA count=103 | |
| U29402 | Trailer TTAAAG, Position 191 Mus musculus acidic ribosomal phosphoprotein P1 mRNA |
| ATGCTAGTCT count=102 | |
| L31609 | Trailer TTGTAC, Position 226 Mus musculus (clone mcori-1ck9) S29 ribosomal protein mRNA |
| ATCTTGTGAA count=90 | |
| M20632 | Trailer AACCCA, Position 1617 Mouse LLRep3 protein mRNA from a repetitive element |
| AF283559 | Trailer AACCCA, Position 811 Mus musculus ribosomal protein S2 mRNA |
| TGCGGTGACT count=86 | |
| X57961 | Trailer TGATGT, Position 662 M.musculus mRNA for ribosomal protein L7. |
| X60289 | Trailer TGATGT, Position 452 M.musculus mRNA for ribosomal protein S24. |
| GCATTGCCAA count=85 | |
| Y00225 | Trailer GGAGGA, Position 1192 Murine mRNA for J1 protein |
| AATGATGAGG count=83 | |
| M19141 | Trailer ACAAAC, Position 1748 Mouse heat shock protein 70 cognate mRNA |
| U27129 | Trailer ACAAAC, Position 1713 Mus musculus breast heat shock 73 protein (hsc73) mRNA |
| TGGCGCCCTC count=79 | |
| D10084 | Trailer TTCTGG, Position 160 Mus musculus aberrant mRNA for complement component C4. |
| TGCAACTGTT count=77 | |
| U11248 | Trailer AAATAA, Position 266 Mus musculus C57BL/6J ribosomal protein S28 mRNA |
| TGCATATGGA count=74 | |
| M17516 | Trailer TGATGG, Position 818 Mouse lactate dehydrogenase A-4 (LDH-A) mRNA |
| U13687 | Trailer TGATGG, Position 1618 Mus musculus DBA/2J lactate dehydrogenase-A (LDH-A) mRNA |
| AGCAAGCAGG count=61 | |
| J04181 | Trailer AGTACG, Position 1130 Mouse A-X actin mRNA |
| M12481 | Trailer AGTACG, Position 990 Mouse cytoplasmic beta-actin mRNA. |
| X03765 | Trailer AGTACG, Position 990 Mouse mRNA for cytoplasmatic beta-actin (pAL 41; AA 27-375). |
| X03672 | Trailer AGTACG, Position 1148 Mouse cytoskeletal mRNA for beta-actin. |
| CCGCGAGGCC count=59 | |
| U67770 | Trailer CGGAAG, Position 265 Mus musculus ribosomal protein S26 (RPS26) mRNA |
| GAGAAGATGC count=59 | |
| X80699 | Trailer AGGAGT, Position 464 M.musculus L26 mRNA. |
| AGGCTACTAC count=57 | |
| X05021 | Trailer AAAGTT, Position 336 Murine mRNA with homology to yeast L29 ribosomal protein gene. |
| GTCGTTCTGG count=55 | |
| M22432 | Trailer TAAGAA, Position 1197 Mus musculus protein synthesis elongation factor Tu (eEF-Tu |
| X13661 | Trailer TAAGAA, Position 1174 Mouse mRNA for elongation factor 1-alpha (EF 1-alpha). |
| GACAAGGCCA count=53 | |
| L04151 | Trailer GCGAGA, Position 798 Mouse apolipoprotein A-I/CIII mRNA. |
| X64262 | Trailer GCGAGA, Position 807 M.musculus mRNA for Apolipoprotein A-I. |
| AAGCAAAAAA count=52 | |
| X83590 | Trailer AAAAAA, Position 325 M.musculus mRNA for ribosomal protein L5 |
| AAAAAAAAAA count=50 | |
| U95215 | Trailer AAAAAA, Position 1851 Mus musculus bile acid CoA: amino acid N-acyltransferase (Baat) |
| X82648 | Trailer AAAAAA, Position 878 M.musculus mRNA for apolipoprotein D. |
| AF218865 | Trailer AAAAAA, Position 2807 Mus musculus BETA3 mRNA |
| AF146227 | Trailer AAAAAA, Position 2880 Mus musculus MutS homolog 5 (Msh5) mRNA |
| AF107352 | Trailer AAAAAA, Position 2669 Mus musculus MSH5 (Msh5) mRNA |
| AB041581 | Trailer AAAAAA, Position 1864 Mus musculus brain cDNA |
| CCCTCCCACA count=49 | |
| M36829 | Trailer GAATAG, Position 2387 Mouse heat-shock protein hsp84 mRNA. |
| M18186 | Trailer GAATAG, Position 2397 Mouse 84 kD heat shock protein mRNA |
| TTTGCCGGCA count=46 | |
| M81745 | Trailer AGCAGC, Position 123 Mouse 1400 base pair ubiquitin mRNA |
| X51703 | Trailer AGCAGC, Position 917 Mouse mRNA for ubiquitin. |
| AGAAAAAAAA count=45 | |
| X62897 | Trailer AAAA , Position 533 Mus musculus mRNA for skeletal muscle chloride channel |
| X62896 | Trailer AAAA , Position 730 M.musculus mRNA (cDNA2) skeletal muscle chloride channel |
| Y12883 | Trailer AAAAAA, Position 1446 M.musculus mRNA for nonselenium glutathione peroxidase. |
| AGCGGTGGGA count=44 | |
| Y00348 | Trailer ATGACA, Position 184 Mouse mRNA for ribosomal protein S6. |
| TCTCTTCCCA count=44 | |
| M73436 | Trailer GAGGAA, Position 711 Mouse ribosomal protein S4 (Rps4) mRNA |
| CCGACACCAA count=42 | |
| D25213 | Trailer GGAGAT, Position 306 Mouse rpS17 mRNA for ribosomal protein S17 |
| GGTGCCACCC count=42 | |
| M33330 | Trailer ACTCCT, Position 426 Mouse insulinoma (rig) mRNA |
| AGTATAATAA count=41 | |
| AF283667 | Trailer AGGAGT, Position 1703 Mus musculus phosphoglycerate mutase 1 (Pgam1) mRNA |
| CGTATTACCT count=39 | |
| AF097438 | Trailer ATTGTG, Position 765 Mus musculus brain expressed X-linked protein 1 (Bex1) mRNA |
| AF051347 | Trailer ATTGTG, Position 753 Mus musculus REX-3 mRNA |
| CTGACCACAT count=36 | |
| AF260271 | Trailer GAACAA, Position 637 Mus musculus 60S ribosomal Protein L9 mRNA |
| GTTCCAAAGC count=36 | |
| J05277 | Trailer CAGAAG, Position 4054 Mouse hexokinase mRNA |
| TGACACCCTC count=36 | |
| M36401 | Trailer TTCTGG, Position 85 Mouse B2 repetitive sequence mRNA. |
| AF127662 | Trailer TTCTGG, Position 2398 Mus musculus strain C57BL/6J-gm/gm RAB geranylgeranyl transferase |
| AF127661 | Trailer TTCTGG, Position 2367 Mus musculus strain C57BL/6J-gm/gm RAB geranylgeranyl transferase |
| AF127660 | Trailer TTCTGG, Position 2424 Mus musculus strain C57BL/6J RAB geranylgeranyl transferase alpha |
| AF127659 | Trailer TTCTGG, Position 2479 Mus musculus strain C57BL/6J-gm/gm RAB geranylgeranyl transferase |
| AF127658 | Trailer TTCTGG, Position 2479 Mus musculus strain C57BL/6J RAB geranylgeranyl transferase alpha |
| AF127657 | Trailer TTCTGG, Position 2270 Mus musculus strain C57BL/6J-gm/gm RAB geranylgeranyl transferase |
| AF127656 | Trailer TTCTGG, Position 2327 Mus musculus strain C57BL/6J RAB geranylgeranyl transferase alpha |
| TGAAATGAAC count=35 | |
| AB037665 | Trailer CAGCCC, Position 319 Mus musculus rpl38 mRNA for ribosomal protein L38 |
| TGTGCAGGGT count=35 | |
| M21495 | Trailer ATTAAC, Position 1513 Mouse cytoskeletal gamma-actin mRNA |
| X13055 | Trailer ATTAAC, Position 1455 Murine mRNA for cytoplasmic gamma-actin. |
| AF195094 | Trailer ATTAAC, Position 1571 Mus musculus gamma actin-like protein (Actl) mRNA |
| ATGTCTTCTC count=34 | |
| M28727 | Trailer CATGTT, Position 1144 Mouse alpha-tubulin gene M-alpha-2 |
| M13446 | Trailer CATGTT, Position 1520 Mouse alpha-tubulin isotype M-alpha-2 mRNA |
| CATCTGCATT count=34 | |
| X15267 | Trailer TGCGGC, Position 884 Mouse mRNA for acidic ribosomal phosophoprotein PO. |
| CCCCTCCCCC count=34 | |
| U88550 | Trailer GCTGGT, Position 4308 Mus musculus protocadherin 2C mRNA |
| TAAAAAAAAA count=34 | |
| L07049 | Trailer AAAAAA, Position 7358 Mus musculus aggrecan mRNA |
| TTCGACACAG count=34 | |
| X81987 | Trailer AGAAGG, Position 717 M.musculus mRNA for TAX responsive element binding protein 107. |
| ATCTTTTCTA count=33 | |
| X68193 | Trailer AAACAA, Position 555 M.musculus mRNA for nucleoside diphoshate kinase B. |
| ATGTGAGCAT count=33 | |
| X76772 | Trailer CGTGGA, Position 621 M.musculus mRNA for ribosomal protein S3. |
| TGCATGCCCT count=32 | |
| J04716 | Trailer GGGTTC, Position 511 Mouse ferritin light chain |
| CTGGGTACTG count=31 | |
| L04280 | Trailer CACAGT, Position 471 Mus musculus ribosomal protein (Rpl12) mRNA |
| GGAGACATTG count=31 | |
| U93864 | Trailer TCACAG, Position 371 Mus musculus ribosomal protein S11 mRNA |
| TGCGTATGGC count=31 | |
| X74856 | Trailer GGCCAT, Position 383 M.musculus L28 mRNA for ribosomal protein L28. |
| ACAGAGCTGG count=30 | |
| AF085809 | Trailer GAAGAT, Position 3408 Mus musculus synapsin Ib (SynI) mRNA |
| CTCCTTGTCA count=30 | |
| U43206 | Trailer AGTACA, Position 1141 Mus musculus phosphatidylethanolamine binding protein mRNA |
| AB046417 | Trailer AGTACA, Position 1144 Mus musculus HCNPpp mRNA for hippocampal cholinergic |
| TATCACCTGT count=30 | |
| X06407 | Trailer CACCAT, Position 627 Mouse mRNA for 21 kd polypeptide under translational control. |
| ACCATTTCCG count=29 | |
| X52803 | Trailer ACTGTG, Position 506 Mouse mRNA for cyclophilin (EC 5.2.1.8). |
| CGCAGGCGCA count=29 | |
| U28917 | Trailer AGGCCC, Position 116 Mus musculus 60S ribosomal protein (A52) mRNA |
| AGGAGGGTCT count=28 | |
| D90151 | Trailer ATTTCC, Position 1299 Mouse mRNA for CArG-binding factor-A |
| CGGGAGGTGT count=28 | |
| X75895 | Trailer GCGGCT, Position 149 M.musculus mRNA for ribosomal protein L36. |
| GTGTACTTCA count=28 | |
| L32751 | Trailer TTGGGA, Position 777 Mouse (clone M1) GTPase (Ran) mRNA |
| AF159256 | Trailer TTGGGA, Position 752 Mus musculus Lps/Ran GTPase (lps(d)) mRNA |
| TTCCAGGCCC count=28 | |
| M73490 | Trailer GCCTCA, Position 722 Mus musculus apolipoprotein E mRNA |
| M12414 | Trailer GCCTCA, Position 795 Mouse apolipoprotein E mRNA |
| AATGTGCGGA count=27 | |
| U93863 | Trailer TTGAGC, Position 300 Mus musculus ribosomal protein L21 mRNA |
| AATAAAGTGG count=26 | |
| M60456 | Trailer GTTTTT, Position 849 Mouse cyclophilin mRNA |
| X58990 | Trailer GTTTTT, Position 975 Mouse mCyP-S1 mRNA for cyclophilin CyP-S1. |
| TATACAGTCG count=26 | |
| M29016 | Trailer GGAAAC, Position 669 Mouse ribosomal protein L7 (rpL7) mRNA |
| TTTACTTCTA count=26 | |
| X06406 | Trailer CAGAGA, Position 675 Mouse mRNA for translational controlled 40 kDa polyyeptide p40. |
| AF140348 | Trailer CAGAGA, Position 683 Mus musculus 37kDa oncofetal antigen mRNA |
| CGATGCCCTC count=25 | |
| U01663 | Trailer TTTAGT, Position 1887 Mus musculus clone M5 transcription factor USF2 mRNA |
| ACTGTCACTT count=24 | |
| D17653 | Trailer CAGAGG, Position 229 Mouse mRNA for HBp15/L22 |
| TGACGTGCCG count=24 | |
| M32599 | Trailer CCTGGA, Position 770 Mouse glyceraldehyde-3-phosphate dehydrogenase mRNA |
| AGGAGCCTGG count=23 | |
| M34381 | Trailer CCTGTC, Position 1261 Mouse octamer binding transcription factor (oct-3) mRNA |
| X52437 | Trailer CCTGTC, Position 1160 M.musculus mRNA for Oct-4 protein. |
| GCTCATGGAT count=23 | |
| AF224264 | Trailer ATTTTT, Position 1642 Mus musculus pigpen protein mRNA |
| TCTGGCAGTG count=21 | |
| M33212 | Trailer GAGGAA, Position 928 Mouse nucleolar protein N038 mRNA |
| TGCCGCAAGT count=21 | |
| AF118402 | Trailer GCTACG, Position 303 Mus musculus ubiquitin/60S ribosomal fusion protein mRNA |
| TTCCATCCCT count=21 | |
| L06465 | Trailer TCTGCT, Position 475 Mus musculus cytochrome oxidase subunit VIa (liver-type isoform) |
| U08440 | Trailer TCTGCT, Position 465 Mus musculus Balb/c cytochrome c oxidase subunit VIaL mRNA |
| AAGTCCTTTG count=20 | |
| AF214527 | Trailer TGAAAG, Position 258 Mus musculus ribosomal protein L27 (RPL27) mRNA |
| ATTGTAGATG count=20 | |
| D29802 | Trailer AATTGA, Position 890 Mouse mRNA for G protein beta subunit homologue |
| X75313 | Trailer AATTGA, Position 896 M.musculus (C57BL/6) GB-like mRNA. |
| CTTGCCAGTG count=20 | |
| Z31557 | Trailer TAAAAC, Position 2117 M.musculus (129/Sv) Cctz mRNA for CCT (chaperonin containing TCP-1) |
| GCCTGCACAT count=20 | |
| L02913 | Trailer CAGCCC, Position 311 Mouse growth factor-induced delayed early response protein |
| L10613 | Trailer CAGCCC, Position 337 Mus musculus glycosylation-inhibiting factor mRNA |
| L07607 | Trailer CAGCCC, Position 241 Mus musculus migration inhibitory factor (10K protein) mRNA |
| Z23048 | Trailer CAGCCC, Position 258 M.musculus macrophage migration inhibitory factor. |
| CAAAAAAAAA count=19 | |
| AF200349 | Trailer AAA , Position 2566 Mus musculus GPR35 mRNA |
| AB031055 | Trailer AAA , Position 1180 Mus musculus DDP1 mRNA for deafness dystonia protein 1 |
| CACATCTCAA count=19 | |
| M93980 | Trailer AGAAGT, Position 533 Mouse 24.6 kda protein mRNA |
| X75312 | Trailer AGAAGT, Position 526 M.musculus (C57BL/6) QM mRNA. |
| TGAAAATTGG count=18 | |
| X52940 | Trailer ATTAAA, Position 326 Mouse COX7c1 mRNA for cytochrome c oxidase VIIc (EC 1.9.3.1). |
| AAGTCGTGCT count=17 | |
| D26610 | Trailer TCTGGC, Position 171 Mouse mRNA for monoclonal nonspecific suppressor factor beta |
| X65922 | Trailer TCTGGC, Position 159 M.musculus fau mRNA. |
| AF147745 | Trailer TCTGGC, Position 225 Mus musculus monoclonal non-specific suppressor factor beta mRNA |
| CGGAAGAAGA count=17 | |
| M88335 | Trailer TGATGG, Position 468 M.musculus mRNA sequence. |
| GTGACTGGGT count=17 | |
| M37829 | Trailer GGCCAT, Position 455 Mouse mitochondrial cytochrome c oxidase subunit IV (COX IV) mRNA |
| X54691 | Trailer GGCCAT, Position 457 Mouse COX4 mRNA for cytochrome c oxidase subunit IV (EC 1.9.3.1). |
| TCTCTTGCCA count=17 | |
| Z31555 | Trailer CCCAGA, Position 1647 M.musculus (129/Sv) Ccte mRNA for CCT (chaperonin containing TCP-1) |
| TGATTCCCTC count=17 | |
| X56974 | Trailer TTCTGG, Position 1979 M.musculus mRNA for external transcribed spacer (partial) B2 |
| CCGTCAACTT count=16 | |
| M10840 | Trailer CAAGCT, Position 34 Mouse alpha-globin gene |
| M26895 | Trailer CAAGCT, Position 289 Mouse alpha-1-globin mRNA |
| L75940 | Trailer CAAGCT, Position 316 Mus musculus alpha-globin mRNA |
| TGTATTGTTC count=16 | |
| Z19599 | Trailer TTACTG, Position 1674 M.musculus epsilon 14-3-3 isoform mRNA. |
| D87663 | Trailer TTACTG, Position 1620 Mus musculus mRNA for 14-3-3 epsilon |
| TTGACCACTC count=16 | |
| D00472 | Trailer ATGGAA, Position 1043 Mus musculus mRNA for cofilin |
| AAGAAGCCAC count=15 | |
| D38379 | Trailer GCCCCA, Position 1031 Mouse mRNA for pyrubate kinase M. |
| X97047 | Trailer GCCCCA, Position 1008 M.musculus mRNA for M2-type pyruvate kinase. |
| ACCACCAAGG count=15 | |
| X56135 | Trailer ACTTGA, Position 203 Mouse mRNA for prothymosin alpha. |
| AGAGAAGCAG count=15 | |
| M19381 | Trailer ATATTG, Position 561 Mouse calmodulin (Cam I) mRNA |
| X61432 | Trailer ATATTG, Position 401 M.musculus mRNA for calmodulin. |
| ATCCACCTGC count=15 | |
| U78085 | Trailer TCACTG, Position 359 Mus musculus ribosomal protein S5 mRNA |
| Y12431 | Trailer TCACTG, Position 349 M.musculus mRNA for ribosomal protein S5. |
| ATGACGCTGA count=15 | |
| M99167 | Trailer ATAAAT, Position 1329 Mouse rearranged RNA binding protein (FLI-2) mRNA |
| D86729 | Trailer ATAAAT, Position 1294 Mouse mRNA for topoisomerase-inhibitor suppressed |
| D86728 | Trailer ATAAAT, Position 1138 Mouse mRNA for topoisomerase-inhibitor suppressed |
| ATGGTGTAAT count=15 | |
| AF073993 | Trailer AAGACA, Position 1529 Mus musculus heterogenous nuclear ribonucleoprotein A2/B1 (hnRNP |
| CTGCCCTGAG count=15 | |
| U51679 | Trailer CACACC, Position 813 Mus musculus thioredoxin peroxidase (Tpx) mRNA |
| U20611 | Trailer CACACC, Position 838 Mus musculus thioredoxin-dependent peroxide reductase (tpx) mRNA |
| X82067 | Trailer CACACC, Position 845 M.musculus mRNA for thiol-specific antioxidant. |
| AATAAACCGT count=14 | |
| M11310 | Trailer TTTGAT, Position 3039 Mouse adenine phosphoribosyltransferase (APRT) |
| ATGCTAAAAG count=14 | |
| X65704 | Trailer GAGATA, Position 195 M.musculus mRNA for small nuclear ribonucleoprotein E. |
| CACGTTGTCA count=14 | |
| J03535 | Trailer CAGTAC, Position 1806 Mus musculus embigin precursor |
| CTGTGTGTGG count=14 | |
| X06342 | Trailer GACTGA, Position 178 Mouse mRNA for prostatic secretory glycoprotein (p12) homologous to |
| AAGAAATACA count=13 | |
| U27316 | Trailer CATAAT, Position 964 Mus musculus adenine nucleotide translocase-2 (Ant2) mRNA |
| U10404 | Trailer CATAA , Position 879 Mus musculus adenine nucleotide translocase mRNA |
| X70847 | Trailer CATAAT, Position 966 M.musculus mRNA for adenine nucleotide translocase. |
| ATAATTGCTG count=13 | |
| AF004565 | Trailer TATCAT, Position 785 Mus musculus dUTPase mRNA |
| CACCAGCTGA count=13 | |
| M60419 | Trailer GAATTC, Position 1033 Mouse Y-box binding protein 1/DNA binding protein B mRNA |
| M62867 | Trailer GAATTC, Position 1033 Mouse Y box transcription factor (MSY-1) mRNA |
| X57621 | Trailer GAATTC, Position 938 M.musculus YB-1 mRNA. |
| U33197 | Trailer GAATTC, Position 1029 Mus musculus Y-box binding protein mYB-1b mRNA |
| AF038994 | Trailer GAATTC, Position 844 Mus musculus Y box transcription factor mRNA |
| GCAGAACCAG count=13 | |
| L21027 | Trailer GGCATC, Position 1532 Mus musculus A10 mRNA |
| TTCCCGTTGG count=13 | |
| D21252 | Trailer CCGCTC, Position 499 Mouse mRNA for OSF-3 |
| D16142 | Trailer CCGCTC, Position 495 Mouse mRNA for MSP23. |
| AGGAGCTGGC count=12 | |
| L19737 | Trailer ATTGGC, Position 245 Mus musculus H+ ATP synthase subunit c mRNA |
| CTCCAGCTCC count=12 | |
| Z31399 | Trailer ATCAGC, Position 1584 M.musculus Ccth mRNA for CCT eta subunit (chaperonin containing |
| CCACGTATCC count=11 | |
| D10916 | Trailer TGGGCC, Position 84 Mus musculus NEDD-6 mRNA |
| U12403 | Trailer TGGGCC, Position 372 Mus musculus Csa-19 mRNA |
| CTACTGTGGA count=11 | |
| J04633 | Trailer TGACAC, Position 2367 Mouse heat shock protein 86 mRNA |
| X16857 | Trailer TGACAC, Position 731 Mouse mRNA for HSP86 heat-shock protein. |
| GTGTTGTTTA count=11 | |
| U58633 | Trailer CCGTTG, Position 1043 Mus musculus p34 cdc2 kinase mRNA |
| X16461 | Trailer CCGTTG, Position 959 Mouse cdc2 mRNA for CDC2 kinase. |
| TCAGGGCAGA count=11 | |
| D63707 | Trailer AATGAT, Position 1424 Mouse mRNA for hepatoma derived growth factor (HDGF) |
| AF251787 | Trailer AATGAT, Position 1583 Mus musculus TDRM1 protein (Tdrm1) mRNA |
| TTGCCAAAGC count=11 | |
| X03351 | Trailer AGTAGC, Position 494 Mouse mRNA for prealbumin. |
| AACACCGCAA count=10 | |
| M13964 | Trailer CCTTTC, Position 1244 Mouse stimulatory G protein of adenylate cyclase |
| Y00703 | Trailer CCTTTC, Position 1298 Mouse uncoupled S49 cells mRNA for stimulatory GTP-binding protein |
| AF116268 | Trailer CCTTTC, Position 2386 Mus musculus G-protein XLalphas mRNA |
| AF107848 | Trailer CCTTTC, Position 2202 Mus musculus neuroendocrine-specific golgi protein p55 isoform 2 |
| AB041808 | Trailer CCTTTC, Position 1531 Mus musculus brain cDNA |
| AGGGACCACG count=10 | |
| X65553 | Trailer AACAGA, Position 2168 M.musculus mRNA for poly(A) binding protein. |
| CAGTATATGC count=10 | |
| M33934 | Trailer CTTGAA, Position 1617 Mouse IMP dehydrogenase mRNA |
| CCCACTTATG count=10 | |
| M24509 | Trailer TGACTT, Position 482 Mouse ferritin heavy chain |
| J03941 | Trailer TGACTT, Position 499 Mouse ferritin heavy chain (MFH) mRNA |
| X12812 | Trailer TGACTT, Position 445 Murine mRNA for macrophage ferritin heavy subunit. |
| CCCGTGCCCC count=10 | |
| X97490 | Trailer TGCCTA, Position 819 M.musculus mRNA for PNG protein. |
| CCCTTGGTTG count=10 | |
| AB024303 | Trailer CTGGAT, Position 1823 Mus musculus mRNA similar to human Sua1 |
| TATGAGTGAC count=10 | |
| M65037 | Trailer AG , Position 447 Mouse metastasis-reducing protein (nm23) mRNA |
| TCATTACAGA count=10 | |
| M24560 | Trailer TGGTTG, Position 2635 Mouse tyrosinase (tyr1) mRNA |
| M30379 | Trailer TGGTTG, Position 74 Mouse MHC class I mRNA containing an Alu-type II repeat element. |
| TGAAAAAAAA count=10 | |
| AB041616 | Trailer AAAAAA, Position 2420 Mus musculus brain cDNA |
| TTGACGCTAA count=10 | |
| X53068 | Trailer ATGCAG, Position 1191 Mouse mRNA for proliferating cell nuclear antigen. |
| TTTTTTTTTT count=10 | |
| D89571 | Trailer TTTTTT, Position 2395 Mus musculus mRNA for ryudocan core protein |
| AAATAAAGTT count=9 | |
| X51905 | Trailer AGCAAT, Position 1211 Mouse Ldh-2 mRNA for lactate dehydrogenase-B (EC 1.1.1.27). |
| ACCACCCCTG count=9 | |
| Z31553 | Trailer TTAAGC, Position 1648 M.musculus (129/Sv) Cctb mRNA for CCT (chaperonin containing TCP-1) |
| AB041570 | Trailer TTAAGC, Position 1528 Mus musculus brain cDNA |
| CCAGTAATGT count=9 | |
| U97327 | Trailer AAACAA, Position 1107 Mus musculus calcyclin binding protein (CACYBP) mRNA |
| CTGAATGACG count=9 | |
| AF118128 | Trailer TTCAGG, Position 1194 Mus musculus nuclear RNA helicase Bat1 mRNA |
| CTGTGGTGGT count=9 | |
| D26177 | Trailer GGCAGG, Position 3036 Mouse mRNA for D-factor/LIF receptor |
| GTGATTGTGC count=9 | |
| AF149782 | Trailer TGGGCC, Position 330 Mus musculus hemoglobin beta minor mRNA |
| AB020017 | Trailer TGGGCC, Position 327 Mus musculus mRNA for beta-2-globin |
| AB020016 | Trailer TGGGCC, Position 327 Mus musculus mRNA for beta-2-globin |
| AB020015 | Trailer TGGGCC, Position 327 Mus musculus mRNA for beta-1-globin |
| AB020014 | Trailer TGGGCC, Position 327 Mus musculus mRNA for beta-2-globin |
| AB020013 | Trailer TGGGCC, Position 327 Mus musculus mRNA for beta-1-globin |
| GTGGATGGCA count=9 | |
| M11686 | Trailer GAGTGG, Position 1269 Mouse endo B cytokeratin mRNA |
| M36376 | Trailer GAGTGG, Position 1264 Mouse keratin D mRNA |
| TGACCACATG count=9 | |
| Z16406 | Trailer TCCTAC, Position 258 Mus musculus Mox-2A mRNA. |
| TGCAATGAGG count=9 | |
| X70303 | Trailer CTGGCT, Position 710 M.musculus MC3 mRNA for proteasome. |
| AF099733 | Trailer CTGGCT, Position 633 Mus musculus proteasome subunit C3 (Psma2) mRNA |
| TGCGCTTCCA count=9 | |
| Z85979 | Trailer GAGTGC, Position 348 M.musculus mRNA for histone H3.3A. |
| X91866 | Trailer GAGTGC, Position 627 M.musculus mRNA for H3.3A variant histone. |
| TGGCTGGCCC count=9 | |
| AF144702 | Trailer CACTGA, Position 700 Mus musculus small zinc finger-like protein (Tim13) mRNA |
| TTAAATAAAA count=9 | |
| AB025049 | Trailer CTTGTT, Position 1587 Mus musculus mRNA for Sid393p |
| TTCACACAGC count=9 | |
| M58761 | Trailer ATTATG, Position 1278 Mouse Sm-B protein gene |
| TTGTTGGAGG count=9 | |
| AF118650 | Trailer ATTGGA, Position 958 Mus musculus PKCq-interacting protein PICOT (PICOT) mRNA |
| AACAGCGTTG count=8 | |
| AF271072 | Trailer CCTTCC, Position 880 Mus musculus TGF-beta receptor interacting protein 1 mRNA |
| AF188297 | Trailer CCTTCC, Position 903 Mus musculus TGF-beta receptor binding protein (Trip1) mRNA |
| ACATATGCCG count=8 | |
| M32484 | Trailer GCTATG, Position 743 Mouse placenta and embryonic expression gene (pem) mRNA |
| ACCTCTAGAC count=8 | |
| X17069 | Trailer AGCCCC, Position 1870 Mouse mRNA for protein with homology to transition protein 2 (TP2). |
| X70887 | Trailer AGCCCC, Position 1908 M.musculus mRNA for p59 immunophilin. |
| ACTGGCTGAA count=8 | |
| M31885 | Trailer AATATT, Position 849 Mouse helix-loop-helix DNA binding protein regulator (Id) mRNA |
| AGGTTGAGGG count=8 | |
| Z31556 | Trailer GCAGCC, Position 1835 M.musculus (129/Sv) Cctg mRNA for CCT (chaperonin containing TCP-1) |
| AGTTTCCTTG count=8 | |
| M14223 | Trailer ATTATT, Position 1992 Mouse ribonucleotide reductase M2 subunit mRNA |
| ATGAGGGAGT count=8 | |
| X03040 | Trailer TCCGGT, Position 954 Mouse mRNA for initiation factor eIF-4A long form. |
| X03039 | Trailer TCCGGT, Position 951 Mouse mRNA for initiation factor eIF-4AI. |
| ATGCAGCAGA count=8 | |
| AF073297 | Trailer AGCAGA, Position 144 Mus musculus small EDRK-rich factor 2 (Serf2) mRNA |
| CATTGGAGGG count=8 | |
| AJ223070 | Trailer CAAGTC, Position 2142 Mus musculus mRNA for TCF-4 protein. |
| CCAGACTGGT count=8 | |
| M76763 | Trailer TCCTGA, Position 256 Mus musculus ribosomal protein (Ke-3) mRNA |
| CTCACCTTTG count=8 | |
| L04128 | Trailer ACCAGC, Position 383 Mus musculus ribosomal protein L18 (rpL18) mRNA |
| GATGAAGAAC count=8 | |
| U48364 | Trailer CTGTTA, Position 6141 Mus musculus muscle-specific transcriptional activator alpha-NAC |
| U22151 | Trailer CTGTTA, Position 190 Mus musculus translational regulatory factor alpha NAC/1.9.2. |
| GTTTGGTTTT count=8 | |
| X58069 | Trailer GTTTTT, Position 1338 Mouse mRNA for Histone H2A.X. |
| TGAATGTCCG count=8 | |
| AF304351 | Trailer AGAGAG, Position 910 Mus musculus eukaryotic translation elongation factor 1-delta mRNA |
| TTTGGCACCA count=8 | |
| AF232717 | Trailer TTGGAA, Position 950 Mus musculus protein arginine N-methyltransferase 1 (Mrmt1) mRNA |
| AF232716 | Trailer TTGGAA, Position 1004 Mus musculus protein arginine N-methyltransferase 1 (Mrmt1) mRNA |
| AAAATGTGGT count=7 | |
| D55720 | Trailer GCCAGA, Position 1684 Mouse mRNA for nuclear pore-targeting complex |
| U34229 | Trailer GCCAGA, Position 1507 Mus musculus pendulin mRNA |
| U12270 | Trailer GCCAGA, Position 1622 Mus musculus pendulin (pendulin) mRNA |
| AGCCGCTCAA count=7 | |
| AF019662 | Trailer GATTCT, Position 669 Mus musculus C6-I proteasome chain mRNA |
| AGGTAACTGC count=7 | |
| U64450 | Trailer TTGCTA, Position 542 Mus musculus nucleophosmin/nucleoplasmin-3 (Npm3) mRNA |
| AGTGGCTTTG count=7 | |
| U65636 | Trailer AATGAA, Position 782 Mus musculus beta proteasome subunit (Lmp3) mRNA |
| ATAAAAAAAA count=7 | |
| U69171 | Trailer AAAAAA, Position 1445 Mus musculus peroxisomal PTS2 receptor mRNA |
| ATAAGAGGCA count=7 | |
| X53824 | Trailer CGTGAT, Position 746 Mouse X16 mRNA. |
| ATCATGGCAA count=7 | |
| Z37164 | Trailer AACCAG, Position 1654 M.musculus Cctq mRNA encoding cytosolic chaperone containing TCP-1 |
| ATGCTCCTGC count=7 | |
| AB025408 | Trailer AGCTGA, Position 996 Mus musculus mRNA for sid478p |
| ATGTTATTCA count=7 | |
| U37721 | Trailer ATTCCA, Position 326 Mus musculus cytochrome c oxidase subunit VIII precursor (Cox8l) |
| ATTACCATTA count=7 | |
| AF108397 | Trailer GAATAT, Position 18 Mus musculus sodium/calcium exchanger isoform NaCa2 (Ncx1) mRNA |
| AF108396 | Trailer GAATAT, Position 18 Mus musculus sodium/calcium exchanger isoform NaCa3 (Ncx1) mRNA |
| ATTGTTTGTG count=7 | |
| U91848 | Trailer ATTGAA, Position 936 Mus musculus clathrin light chain 2 mRNA |
| CAACTCCAAT count=7 | |
| M16465 | Trailer TCAACA, Position 479 Mouse calpactin I light chain (p11) mRNA |
| CCCAACAATG count=7 | |
| M28732 | Trailer TCAAGA, Position 60 Mouse beta-tubulin gene M-beta-5 |
| CCTGTTCCCC count=7 | |
| AB012865 | Trailer TGAGAA, Position 619 Mus musculus mRNA for C184S protein |
| CTGAGAACTT count=7 | |
| S71213 | Trailer CAGGCT, Position 1521 G protein Gi2 alpha [mice |
| J00415 | Trailer CAAACT, Position 61 mouse beta-globin epsilon y3 gene mrna. |
| M19236 | Trailer CAGGCT, Position 40 Mouse beta-globin gene. |
| M26894 | Trailer CAAGCT, Position 277 Mouse beta-H1-globin mRNA |
| V00857 | Trailer CAAACT, Position 234 Mouse messenger RNA for beta-like y2-globin (embryonic). |
| TCTGAGTTCA count=7 | |
| AJ278064 | Trailer CAACGG, Position 1906 Mus musculus mRNA for beta |
| AJ272020 | Trailer AGGCCA, Position 602 Mus musculus partial mRNA for 20S proteasome subunit C2 (Psma1 |
| AF294899 | Trailer CAACGG, Position 1908 Mus musculus beta |
| TGATACCCTC count=7 | |
| M31448 | Trailer TTCCGG, Position 43 Mouse B2 repetitive sequence mRNA |
| TGGACCTCAC count=7 | |
| U67303 | Trailer CTCTGA, Position 2038 Mus musculus KRAB-A interacting protein mRNA |
| X99644 | Trailer CTCTGA, Position 1648 M.musculus mRNA for TIF1 beta protein. |
| TTCAGATTGA count=7 | |
| X12944 | Trailer TAATTC, Position 822 Mouse mRNA for HMG-17 chromosomal protein. |
| TTGCACCCCA count=7 | |
| AB021122 | Trailer AACTGG, Position 989 Mus musculus Tim23 mRNA for translocase of inner mitochondrial |
| AAAGGCGTGC count=6 | |
| U79776 | Trailer GCACCA, Position 2773 Mus musculus ajuba (Ajuba) mRNA |
| AACATCATTG count=6 | |
| Z23055 | Trailer CAGCAG, Position 258 M.musculus protein-tyrosine-phosphatase mRNA |
| AATATTTATT count=6 | |
| X58486 | Trailer GATGTG, Position 367 M.musculus mRNA for cytochrome c oxidase subunit VIIa. |
| AF037371 | Trailer GATGTG, Position 409 Mus musculus cytochrome c oxidase subunit VIIa-L precursor (Cox7al) |
| ACCACCAGGA count=6 | |
| AF060092 | Trailer CGCTGA, Position 598 Mus musculus proteasome subunit C10-II (Psmb3) mRNA |
| ACCCGTCATA count=6 | |
| AF043120 | Trailer AAATCT, Position 1565 Mus musculus beta prime coatomer protein mRNA |
| ACCTTTGTCT count=6 | |
| D26091 | Trailer GATAGC, Position 2251 Mus musculus mRNA for mCDC47 |
| ACGAGTTCGA count=6 | |
| X04231 | Trailer GGCCAG, Position 56 Mouse 4.5S small RNA associated with poly-(a)-containing RNAs. |
| AGCATTCTTG count=6 | |
| U83628 | Trailer AGCTGG, Position 434 Mus musculus defender against cell death 1 protein (DAD1) mRNA |
| AGCCCCGCCT count=6 | |
| U94479 | Trailer GTCACA, Position 1694 Mus musculus integrin binding protein kinase mRNA |
| ATGCACTGGG count=6 | |
| J04179 | Trailer TTGGCT, Position 994 Mouse chromatin nonhistone high mobility group protein (HGM-I(Y) |
| ATTGTGAACA count=6 | |
| L40406 | Trailer CCTCGT, Position 3330 Mus musculus heat shock protein (hsp-E7I) mRNA |
| D67017 | Trailer CCTCGT, Position 3191 Mus wagneri mRNA for heat shock protein 105 kDa beta (42 degrees |
| D67016 | Trailer CCTCGT, Position 3236 Mus wagneri mRNA for heat shock protein 105 kDa alpha |
| ATTTATGGAG count=6 | |
| X53333 | Trailer GTTCTG, Position 654 Mouse mRNA for triosephosphate isomerase (EC 5.3.1.1). |
| CATATTTAGT count=6 | |
| AF139894 | Trailer TTTATA, Position 1277 Mus musculus RNA-binding protein alpha-CP1 (Pcbp1) mRNA |
| CATCCAAAAA count=6 | |
| AF020185 | Trailer CAAGGA, Position 397 Mus musculus protein inhibitor of nitric oxide synthase (PIN) mRNA |
| CCACCTCATC count=6 | |
| X53476 | Trailer TCATTT, Position 449 Mouse mRNA for non-histone chromosomal protein HMG-14. |
| CCAGCACCGA count=6 | |
| J03928 | Trailer GGGGAA, Position 2445 Mouse CD1 phosphofructokinase (PFK) mRNA |
| CCTTCCCCAC count=6 | |
| AF100694 | Trailer CTAGCT, Position 1637 Mus musculus Pontin52 mRNA |
| CGCTTGGCAG count=6 | |
| U13393 | Trailer CCATTC, Position 579 Mus musculus delta proteasome subunit mRNA |
| CGGTGGACAA count=6 | |
| AF207820 | Trailer TATTGT, Position 219 Mus musculus apolipoprotein M mRNA |
| CTCACCGTGG count=6 | |
| U05809 | Trailer AGGACC, Position 1756 Mus musculus LAF1 transketolase mRNA |
| GACTCCAGAG count=6 | |
| AF095936 | Trailer ACGACT, Position 348 Mus musculus succinate dehydrogenase Ip subunit mRNA |
| TCACTCAGCA count=6 | |
| U70494 | Trailer ACAAGT, Position 895 Mus musculus histone H2A.Z (H2A.Z) mRNA |
| TCTGTTTAAA count=6 | |
| X60367 | Trailer AAAAAA, Position 2614 Mouse CRBPI mRNA for cellular retinol binding protein I (mCRBPI). |
| TTTGGGGGAA count=6 | |
| X80421 | Trailer TTGTTA, Position 91 M.musculus tex190 mRNA (3'region). |
| TTTGTGAAGA count=6 | |
| D50527 | Trailer CCCTGA, Position 271 Mouse mRNA for TI-225 |
| TTTTGGGAGA count=6 | |
| Y09234 | Trailer GGAAGA, Position 2335 M.musculus mRNA for kinase-like protein MSTK2S |
| AJ223071 | Trailer GGAAGA, Position 2479 Mus musculus mRNA for serine/threonine kinase protein |
| AACAAGAAAT count=5 | |
| X14425 | Trailer GTTATG, Position 428 Mouse mRNA for profilin. |
| AAGGACGAGG count=5 | |
| U85089 | Trailer ACCAGC, Position 501 Mus musculus thioredoxin mRNA |
| AATGTGTAGA count=5 | |
| M20617 | Trailer TGCCAT, Position 1410 Mouse ornithine decarboxylase mRNA |
| M12330 | Trailer TGCCAT, Position 843 Mouse kidney ornithine decarboxylase mRNA |
| M10624 | Trailer TGCCAT, Position 2111 Mouse ornithine decarboxylase mRNA |
| ACCCCTCCTC count=5 | |
| M64298 | Trailer ATTCCA, Position 652 Mouse vacuolar H(+)-ATPase (mvp) mRNA |
| AGAACCCAGC count=5 | |
| D12618 | Trailer CGAGTG, Position 1280 Mouse mRNA for nucleosome assembly protein-1 |
| X61449 | Trailer CGAGTG, Position 996 M.musculus mRNA for clone DN38. |
| AGACCTGTGG count=5 | |
| AF083214 | Trailer CTGAGT, Position 676 Mus musculus SCF complex protein Skp1 mRNA |
| AGCAGAGTGG count=5 | |
| L31515 | Trailer ACGCTG, Position 237 Mus musculus anticryptococcal Ig 21D2 L-chain mRNA V region |
| M22426 | Trailer AGGCTG, Position 120 Mouse Ig rearranged kappa-chain mRNA from hybridoma (CBA/N x |
| M19770 | Trailer AGNNNG, Position 209 Mouse Ig active kappa chain mRNA V-region mAb E |
| M13600 | Trailer AGGCTG, Position 120 Mouse Ig active kappa-chain VJ2 mRNA from HP-GAT. |
| K00713 | Trailer AGGCTG, Position 114 Mouse Ig kappa active CGAT+ anti-GAT partial mRNA from hybridoma G6 |
| K00712 | Trailer AGGCTG, Position 119 Mouse Ig kappa active CGAT+ anti-GAT partial mRNA from hybridoma G7 |
| K00711 | Trailer AGGCTG, Position 95 Mouse Ig kappa active CGAT+ anti-GAT partial mRNA from hybridoma G5 |
| K00710 | Trailer AGGCTG, Position 120 Mouse Ig kappa active CGAT+ anti-GAT partial mRNA from hybridoma G8 |
| X66634 | Trailer AGGCTG, Position 334 M.musculus rearranged V(k)45.1 mRNA for immunoglobulin kappa light |
| U41438 | Trailer AGGCTG, Position 237 Mus musculus monoclonal antibody FG1 to cardiolipin |
| Z50159 | Trailer TCATGG, Position 205 M.musculus mRNA for Sui1. |
| U27340 | Trailer AGCGAT, Position 2059 Mus musculus sulfated glycoprotein (Sgp1) mRNA |
| U14648 | Trailer TGTGAA, Position 1731 Mus musculus putative myelin regulatory factor 1 mRNA |
| CAAAGTTGGC count=5 | |
| U94402 | Trailer CAGCAT, Position 1045 Mus musculus ubiquitin conjugating enzyme UBC9 mRNA |
| CAAGTCATGA count=5 | |
| J02583 | Trailer TTTGAA, Position 1168 Mouse cysteine proteinase mRNA |
| X06086 | Trailer TTTGAA, Position 1177 Mouse mRNA for major excreted protein (MEP). |
| AF121839 | Trailer TTTGAA, Position 1155 Mus musculus cell-line LXB2 cathepsin L mRNA |
| AF121838 | Trailer TTTGAA, Position 1155 Mus musculus cell-line LXA1 cathepsin L mRNA |
| AF121837 | Trailer TTTGAA, Position 1155 Mus musculus cell-line L929 cathepsin L mRNA |
| CAAGTGTTTA count=5 | |
| X13605 | Trailer ACCATA, Position 832 Murine mRNA for replacement variant histone H3.3. |
| CACATGCGTG count=5 | |
| AF141312 | Trailer TAGCAG, Position 222 Mus musculus hypoxia induced gene 1 (Hig1) mRNA |
| CGCACCGGCC count=5 | |
| D14485 | Trailer TCCCCG, Position 82 Mouse mRNA for dbpA murine homologue |
| CGGATTGGAG count=5 | |
| D31717 | Trailer CCAATG, Position 1691 Mouse MARib mRNA for ribophorin |
| CTCCTCCCCC count=5 | |
| X58196 | Trailer TACCTT, Position 1097 M.musculus H19 mRNA. |
| CTGGTTCCCC count=5 | |
| AF079971 | Trailer ATTTGG, Position 1449 Mus musculus cytohesin-2 mRNA |
| CTTTTGACAA count=5 | |
| M76131 | Trailer CAGCAG, Position 697 Mouse elongation factor 2 (ef-2) mRNA |
| GACCCATCAG count=5 | |
| AF060089 | Trailer GTGTTT, Position 463 Mus musculus proteasome subunit C8 (Psma3) mRNA |
| AF055983 | Trailer GTGTTT, Position 495 Mus musculus proteasome alpha7/C8 subunit mRNA |
| GTGAAGCACC count=5 | |
| X60672 | Trailer TGAATT, Position 3352 M.musculus mRNA for radixin. |
| GTGTGTTGTC count=5 | |
| U67771 | Trailer TGGAGG, Position 354 Mus musculus ribosomal protein L8 (RPL8) mRNA |
| TAGCTTTCTT count=5 | |
| U92454 | Trailer TTCATT, Position 493 Mus musculus WW domain binding protein 5 mRNA |
| TCTTTTCAGA count=5 | |
| AF272044 | Trailer AGTGTC, Position 1867 Mus musculus BRI3 mRNA |
| AB030199 | Trailer AGTGTC, Position 1903 Mus musculus mRNA |
| TGATGATGAG count=5 | |
| AF029844 | Trailer GAGGAA, Position 361 Mus musculus elongation factor 1-beta homolog mRNA |
| TGCAGGAGGA count=5 | |
| U20326 | Trailer TGAAGC, Position 321 Mus musculus cellular nucleic acid binding protein mRNA |
| Z11871 | Trailer TGAAGC, Position 285 M.musculus mRNA for cellular nucleic acid binding protein. |
| Z11870 | Trailer TGCCTG, Position 285 M.musculus mRNA for cellular nucleic acid binding protein. |
| X63866 | Trailer TGCCTG, Position 285 Mus musculus mRNA for cellular nucleic acid binding protein. |
| TGCATCCCCA count=5 | |
| AF225564 | Trailer AAAGCA, Position 1021 Mus musculus aldehyde reductase (Akr1A4) mRNA |
| TGTTCATACA count=5 | |
| AF231925 | Trailer TTTTTG, Position 3204 Mus musculus COPI coatomer complex |
| TTGGCTTCCT count=5 | |
| X60203 | Trailer GGCTTT, Position 1367 M.musculus mRNA for FK506-binding protein. |
| AAAAAAAAAT count=4 | |
| AF099988 | Trailer AATAAT, Position 1891 Mus musculus Ste-20 related kinase SPAK mRNA |
| AACCTGAGGA count=4 | |
| Z54219 | Trailer AAATTG, Position 1029 M.musculus mRNA for mSUG1. |
| AACTGACACA count=4 | |
| AF015729 | Trailer AGTAAA, Position 654 Mus musculus decidual/trophoblast prolactin-related protein |
| AF011385 | Trailer AGTAAA, Position 644 Mus musculus decidual PRL-related protein (dPRP) mRNA |
| AAGCGGGAGG count=4 | |
| D29919 | Trailer AGAAAG, Position 31 Mouse mRNA for mouse transcription factor kA1 (A7) containing |
| D16631 | Trailer AGAAAG, Position 328 Mouse mRNA for transcription factor A1 |
| X17500 | Trailer AGAAAG, Position 381 Mouse mRNA for putative transcription factor of the insulin gene |
| AAGGACATTT count=4 | |
| AF019661 | Trailer AAGAAG, Position 777 Mus musculus zeta proteasome chain mRNA |
| AATGGACTTG count=4 | |
| AF160355 | Trailer TTACAA, Position 2172 Mus musculus glucosamine-6-phosphate deaminase (Gnpda) mRNA |
| AF088903 | Trailer TTTACA, Position 2180 Mus musculus glucosamine-6-phosphate isomerase mRNA |
| AATGGATTGT count=4 | |
| AB041664 | Trailer TTTTAA, Position 1434 Mus musculus brain cDNA |
| ACAAAGTTGG count=4 | |
| D84096 | Trailer TTT , Position 3220 Mouse mRNA for ubiquitin carboxyl-terminal hydrolase (UBP) |
| ACTCCCTGCC count=4 | |
| AJ249439 | Trailer TGAGCC, Position 477 Mus musculus mRNA for Lsm4 protein (homologue of human Lsm4 gene). |
| ACTGGGTGTG count=4 | |
| X64837 | Trailer TTTCAG, Position 2065 M.musculus Oat mRNA for ornithine aminotransferase. |
| ACTTTGAGGA count=4 | |
| Z14044 | Trailer AGCCAT, Position 2361 M.musculus mRNA for valosin-containing protein. |
| AGAGGCTGTG count=4 | |
| AF093403 | Trailer ACTCAA, Position 1341 Mus musculus 2-amino-3-ketobutyrate-coenzyme A ligase (Kbl) mRNA |
| AGCTGAGCTC count=4 | |
| AF096319 | Trailer CTGTTT, Position 1144 Mus musculus folate receptor alpha precursor (FR-alpha) mRNA |
| AGTTAATCCT count=4 | |
| AF144133 | Trailer AACGCT, Position 806 Mus musculus imidazoline receptor I-1-like protein mRNA |
| AGTTAATTTA count=4 | |
| U75680 | Trailer CCATGT, Position 1484 Mus musculus histone stem-loop binding protein (SLBP) mRNA |
| AGTTTGCTCA count=4 | |
| AF093671 | Trailer C , Position 1095 Mus musculus peroxisomal biogenesis factor (Pex11b) mRNA |
| ATGCAGATTG count=4 | |
| M59470 | Trailer TTCCTT, Position 464 Mouse cystatin C mRNA |
| ATTAATGCCC count=4 | |
| U76112 | Trailer TTGAAG, Position 3620 Mus musculus translation repressor NAT1 mRNA |
| U63323 | Trailer CTGAAG, Position 3589 Mus musculus translation initiation factor (Eif4g2) mRNA |
| ATTTCACGGA count=4 | |
| U21011 | Trailer TAAAGG, Position 2831 Mus musculus MutS homolog 2 (mMSH2) mRNA |
| X81143 | Trailer TAAAGG, Position 2814 M.musculus msh2 mRNA. |
| CAGGACCTGG count=4 | |
| AF168675 | Trailer TAGCAA, Position 960 Mus musculus TNF intracellular domain-interacting protein mRNA |
| CAGGCGGCCA count=4 | |
| D90362 | Trailer AGAACT, Position 2517 Mouse mRNA for cadherin-associated protein (CAP102/alpha catenin). |
| X59990 | Trailer AGAACT, Position 2526 M.musculus alpha-catenin gene for alpha-catenin. |
| CAGTATCTGA count=4 | |
| L13791 | Trailer AAGACC, Position 1083 Mus musculus (clone Chop11) C/ATF mRNA |
| M94087 | Trailer AAGACC, Position 1245 M.musculus mATF4 (mTR67) mRNA |
| X61507 | Trailer AAGACC, Position 1255 M.musculus ATF-4 gene for activating transcription factor 4. |
| AB012277 | Trailer AAGACC, Position 726 Mus musculus mRNA for ATF4 |
| CAGTTGTCAA count=4 | |
| D85904 | Trailer GACAAA, Position 2296 Mouse mRNA for apg-2 |
| CATACTGTGA count=4 | |
| L10905 | Trailer CTCCCG, Position 41 Mus musculus (clone Gcap27) mRNA sequence. |
| AF187066 | Trailer CTCCCG, Position 572 Mus musculus p75NTR-associated cell death executor (Nade) mRNA |
| AF097440 | Trailer CTCCCG, Position 567 Mus musculus brain expressed X-linked protein 3 (Bex3) mRNA |
| CATATACCCA count=4 | |
| M88756 | Trailer TTAATA, Position 20 M.musculus mRNA polyA site sequence. |
| U11027 | Trailer TTAATA, Position 171 Mus musculus C57BL/6J Sec61 protein complex gamma subunit mRNA |
| CATCTGTGTA count=4 | |
| L19661 | Trailer GTTTCT, Position 1266 Mus musculus (clones pB1001 |
| X97982 | Trailer GTTTCT, Position 1314 M.musculus mRNA for poly(C)-binding protein |
| X75947 | Trailer GTTTCT, Position 1260 M.musculus mCBP mRNA. |
| CATGAAGTTT count=4 | |
| AF088911 | Trailer TCAGTC, Position 1226 Mus musculus protein phosphatase X (Ppx) mRNA |
| CATGCACTGA count=4 | |
| AF223953 | Trailer TGCTGT, Position 1777 Mus musculus ARL-6 interacting protein-1 mRNA |
| CCTACCCATG count=4 | |
| Y13832 | Trailer GACCCT, Position 1709 Mus musculus mRNA for GT12 protein. |
| CCTTACTGGG count=4 | |
| X70067 | Trailer TACAGC, Position 1188 M.musculus RNPS1 mRNA for RNA/DNA-binding protein. |
| CGCCAACTCA count=4 | |
| D31647 | Trailer TGGGGC, Position 435 Mus musculus mRNA for UTF1 |
| CGGGTGTCCA count=4 | |
| AF060091 | Trailer GTGACA, Position 733 Mus musculus proteasome subunit X (Psmb5) mRNA |
| AB003304 | Trailer GTGACA, Position 736 Mus musculus mRNA for PSMB5 |
| CTACTAATAA count=4 | |
| M83741 | Trailer AACAAG, Position 649 Mouse cofactor mRNA. |
| CTGCCTGAGG count=4 | |
| U33557 | Trailer TTAGAC, Position 2073 Mus musculus folylpolyglutamate synthetase precursor (Fpgs) mRNA |
| U32197 | Trailer TTAGAC, Position 2049 Mus musculus folylpolyglutamate synthetase mRNA |
| CTGCGAGTGG count=4 | |
| M57989 | Trailer TAATAC, Position 130 Mouse IgH chain VDJ3-region mRNA. |
| U20251 | Trailer CGATAC, Position 154 Mus musculus anti-alpha 4 integrin immunoglobulin heavy chain V |
| X60683 | Trailer TAATAC, Position 154 M.musculus rearranged mRNA for anti-cytochrome c immunoglobulin G1 |
| CTGGGGCTGG count=4 | |
| U19604 | Trailer AATGCT, Position 3153 Mus musculus DNA ligase I mRNA |
| U04674 | Trailer AATGCT, Position 2906 Mus musculus DNA ligase I mRNA |
| CTGTACAGCC count=4 | |
| U04443 | Trailer AGTGTG, Position 48 Mus musculus non-muscle myosin light chain 3 (MLC3nm) mRNA |
| CTTGATGCCT count=4 | |
| U60288 | Trailer GTGCCT, Position 795 Mus musculus proteasome subunit iota mRNA |
| GAAGCCTGTG count=4 | |
| Y08948 | Trailer TGTAAA, Position 747 Mus musculus mRNA; contains SIG41 antisense sequences. |
| GAGAAGCCCT count=4 | |
| L13610 | Trailer CCGCCC, Position 700 Mus musculus IFN-response element binding factor 2 (IREBF2) mRNA |
| GAGTACTTTT count=4 | |
| X56548 | Trailer , Position 1325 M.musculus Np-b mRNA for purine-nucleoside phosphorylase. |
| GTTGAGACAC count=4 | |
| AF243512 | Trailer AACGTG, Position 668 Mus musculus Ran-interacting protein MOG1 mRNA |
| TACAAAGTGA count=4 | |
| AJ223293 | Trailer GTGCCA, Position 4190 Mus musculus mRNA for kinesin-related mitotic motor protein. |
| TACAGTTGTA count=4 | |
| U02887 | Trailer ATGAGA, Position 1950 Mus musculus DNA repair protein (XRCC1) mRNA |
| TATGCATCCT count=4 | |
| J05185 | Trailer GTCAAG, Position 2207 Mouse protein disulfide isomerase (ERp59) mRNA |
| TCCTCAGCAT count=4 | |
| M10062 | Trailer TTTCTT, Position 2429 Mouse IgE-binding factor mRNA |
| TCTTTCATTG count=4 | |
| AF096285 | Trailer TACAAG, Position 1549 Mus musculus serine-threonine kinase receptor-associated protein |
| TGAGGCCTTG count=4 | |
| Z47088 | Trailer TTTTTT, Position 1051 M.musculus mRNA for RNA polymerase II elongation factor-like |
| TGCTGAAGGA count=4 | |
| U43921 | Trailer GAAAGC, Position 1177 Mus musculus ubi-d4 mRNA |
| U10435 | Trailer GAAAGC, Position 1112 Mus musculus zinc finger protein Requiem (req) mRNA |
| TGGAACACCA count=4 | |
| AF004591 | Trailer ACTGCT, Position 314 Mus musculus copper transport protein Atox1 (ATOX1) mRNA |
| TGGGGTAGAT count=4 | |
| M92988 | Trailer TCTGAT, Position 1440 Mouse calregulin (ERp60) mRNA |
| TGTACTCCCT count=4 | |
| AF098508 | Trailer GTCAAT, Position 737 Mus musculus dynactin light chain (P24) mRNA |
| TGTCTCTCCT count=4 | |
| U65091 | Trailer CCTGCT, Position 626 Mus musculus melanocyte-specific gene 1 (msg1) mRNA |
| TTAGAGAAGG count=4 | |
| AF077349 | Trailer AGACAG, Position 530 Mus musculus inhibitor of apoptosis homolog mRNA |
| AB013819 | Trailer AGACAG, Position 623 Mus musculus mRNA for TIAP |
| TTGTTAGGGA count=4 | |
| X56746 | Trailer TGGTTG, Position 605 M.musculus mRNA for Cis2 gene. |
| AAAAAACATG count=3 | |
| AF060093 | Trailer AAGAGG, Position 762 Mus musculus proteasome subunit C9 (Psma4) mRNA |
| AAAACAAGAC count=3 | |
| AF060490 | Trailer CCAGCT, Position 2591 Mus musculus TLS-associated protein TASR-2 mRNA |
| AB015894 | Trailer CCAGCT, Position 2563 Mus musculus mRNA for neural specific sr protein NSSR 1 |
| AAACGGCCCC count=3 | |
| U60330 | Trailer GGAGCA, Position 723 Mus musculus Ki antigen mRNA |
| AACAAGCAGA count=3 | |
| U95736 | Trailer CCCCAA, Position 444 Mus musculus frataxin mRNA |
| AF223569 | Trailer CCGCAA, Position 316 Mus musculus frataxin pseudogene |
| AACACTCCCC count=3 | |
| D44464 | Trailer ACGATG, Position 1121 Mouse mRNA for uridine phosphorylase |
| AACAGTAGTT count=3 | |
| D83999 | Trailer GTCTTT, Position 1107 Mus musculus mRNA for the third largest RNA polymerase II subunit |
| AACCTCCTGG count=3 | |
| AJ272046 | Trailer GCTTCA, Position 462 Mus musculus mRNA for calcium channel gamma 5 subunit (CACNG5 |
| AAGAAATGCA count=3 | |
| AF176910 | Trailer TTGATA, Position 2454 Mus musculus cullin 1 (Cul1) mRNA |
| AF136441 | Trailer TTGATA, Position 2414 Mus musculus cullin 1 (Cul1) mRNA |
| AF083216 | Trailer TTGATA, Position 2289 Mus musculus SCF complex protein cul-1 mRNA |
| AAGATTCTAA count=3 | |
| U88539 | Trailer ACCTCC, Position 3262 Mus musculus chromatin structural protein homolog Supt5hp (Supt5h) |
| AAGGGTGTCA count=3 | |
| U17332 | Trailer CGCTGG, Position 203 Mus musculus ribosomal protein L9 (musl9) mRNA |
| U17331 | Trailer CGCTGG, Position 203 Mus musculus mutant ribosomal protein L9 (musl9mu) mRNA |
| AAGGGTTGAG count=3 | |
| AF030198 | Trailer GTAGAT, Position 1047 Mus musculus type 1 sigma receptor mRNA |
| AF004927 | Trailer GTAGAT, Position 1088 Mus musculus sigma 1 receptor mRNA |
| AAGGTCTCCA count=3 | |
| AF031568 | Trailer TGCAAA, Position 1332 Mus musculus heterogeneous nuclear ribonucleoprotein G (Hnrnpg) |
| AATGCAATGA count=3 | |
| AF071315 | Trailer CGTGGG, Position 880 Mus musculus COP9 complex subunit 6 (COPS6) mRNA |
| AATGCTACTG count=3 | |
| U38940 | Trailer ACCCTT, Position 1721 Mus musculus asparagine synthetase mRNA |
| ACACCATGAC count=3 | |
| AB041657 | Trailer TGTAGT, Position 1368 Mus musculus brain cDNA |
| ACAGCAGCCC count=3 | |
| D83073 | Trailer AAGCTC, Position 1117 Mouse mRNA for p38b |
| U10871 | Trailer AAGCTC, Position 1184 Mus musculus MAP kinase mRNA |
| ACAGTCTTTC count=3 | |
| U52822 | Trailer AGCTAG, Position 266 Mus musculus ornithine decarboxylase antizyme mRNA |
| ACCCCCAATT count=3 | |
| X54966 | Trailer GTATGG, Position 707 M.musculus ctsB gene (3' end) for cathepsin B. |
| ACTGACTCTT count=3 | |
| Y14196 | Trailer GGTCAA, Position 1560 Mus musculus mRNA for heterogeneous nuclear ribonucleoprotein H. |
| ACTTGTGCTG count=3 | |
| D21850 | Trailer CCAAAG, Position 1355 Mouse mRNA for Zfp-57 |
| ACTTGTTATG count=3 | |
| AF092039 | Trailer TACATT, Position 745 Mus musculus steroid receptor RNA activator mRNA |
| AGAACAACAG count=3 | |
| AB027565 | Trailer ACAGTG, Position 3123 Mus musculus TXNRD1 mRNA for thioredoxin reductase 1 |
| AGACGTCACT count=3 | |
| AB041810 | Trailer GGAGTT, Position 664 Mus musculus brain cDNA |
| AGCCCTAATC count=3 | |
| M21836 | Trailer CTCTGG, Position 1640 Mouse extra-embryonic endodermal cytokeratin type II (EndoA) mRNA |
| M22831 | Trailer CTCTGG, Position 1587 Mouse keratin type II (EndoA) mRNA |
| AGGAATCCAG count=3 | |
| U60593 | Trailer GCCAGG, Position 2762 Mus musculus cytoplasmic protein Ndr1 (Ndr1) mRNA |
| U52073 | Trailer GCCAGG, Position 2795 Mus musculus TDD5 mRNA |
| AGGAGCTGGA count=3 | |
| D86609 | Trailer GAGAAA, Position 137 Mouse mRNA for RPA16 |
| AGGCCGGGGC count=3 | |
| D67067 | Trailer GGCAGG, Position 2099 Mouse mRNA for thymic epithelial cell surface antigen |
| AGTAAATTAC count=3 | |
| X16319 | Trailer ATGATA, Position 2079 Mouse mRNA for 54K subunit of signal recognition particle. |
| AGTAATAAGC count=3 | |
| AF144562 | Trailer TAGCCT, Position 1565 Mus musculus TFIID subunit TAFII55 mRNA |
| AGTCAGCCCG count=3 | |
| AF161074 | Trailer GGCCAG, Position 145 Mus musculus TF-1 apoptosis related protein 19 (Tfar19) mRNA |
| ATACTGTCAA count=3 | |
| D01034 | Trailer AGAAAT, Position 1608 Mus musculus mRNA for TFIID |
| U63933 | Trailer AGAAAT, Position 1798 Mus musculus domesticus transcription factor IID (Tbp) mRNA |
| ATCATGTTGC count=3 | |
| U81829 | Trailer CATCCT, Position 2310 Mus musculus calumenin mRNA |
| ATGAAGGTGG count=3 | |
| M18091 | Trailer TTTTCC, Position 28 Mouse U1b-2 small nuclear RNA (uRNA). |
| ATGATAGCAG count=3 | |
| X53157 | Trailer CACAGA, Position 159 Mouse mRNA for mitochondrial cytochrome c oxidase subunit Vb. |
| ATGCAGAAGA count=3 | |
| M25825 | Trailer ACGGTG, Position 216 Mouse tctex-1 mRNA |
| ATTATAAAAA count=3 | |
| AB041566 | Trailer TCATAA, Position 890 Mus musculus brain cDNA |
| ATTCAGACAG count=3 | |
| AF098967 | Trailer TACATT, Position 3406 Mus musculus interleukin enhancer binding factor 3 (Ilf3) mRNA |
| ATTGTGGCCC count=3 | |
| AF116911 | Trailer CGCCCC, Position 1295 Mus musculus thymic dendritic cell-derived factor 1 mRNA |
| CAAAACAAGT count=3 | |
| U26228 | Trailer AACATC, Position 36 Mus musculus clone pGN1-24 satellite RNA sequence. |
| CACACCTGAA count=3 | |
| D86563 | Trailer ATGCTA, Position 1313 Mus musculus mRNA for rab 4 |
| CACATCAAGC count=3 | |
| Z22593 | Trailer CAGGAG, Position 529 M.musculus fibrillarin mRNA. |
| CACCTGCATC count=3 | |
| AF104358 | Trailer TGCATT, Position 1544 Mus musculus synectin mRNA |
| AF061263 | Trailer TGCATT, Position 1501 Mus musculus semaF cytoplasmic domain associated protein 1 |
| CACTCCCTGT count=3 | |
| AF295403 | Trailer ACCGCC, Position 915 Mus musculus secretory carrier membrane protein 3 mRNA |
| AF005036 | Trailer ACCGCC, Position 917 Mus musculus secretory carrier membrane protein (SCAMP3) mRNA |
| CAGAAAGAAA count=3 | |
| Y12725 | Trailer ATGAAT, Position 2238 Mus musculus mRNA for pheromone receptor 1. |
| CAGATGCACT count=3 | |
| X78936 | Trailer ATGAGA, Position 1370 M.musculus mRNA for parathyroid hormone/parathyroid hormone related |
| CAGCAAGTCA count=3 | |
| U62297 | Trailer CCATGC, Position 900 Mus musculus transcription factor NF-YC subunit mRNA |
| AB006181 | Trailer CCATGC, Position 900 Mus musculus mRNA for nuclear factor YC |
| CAGCCTGACC count=3 | |
| U10118 | Trailer TGCACA, Position 876 Mus musculus endothelial-monocyte activating polypeptide II mRNA |
| CAGTTACCAG count=3 | |
| Y08702 | Trailer AAGATG, Position 429 M.musculus mRNA for neuronal protein 15.6. |
| CCAAAAAAAA count=3 | |
| X64413 | Trailer AAAAAA, Position 1927 M.musculus mRNA for zinc-finger protein Zfp-37. |
| X52533 | Trailer AA , Position 1419 Mouse mRNA for male germ cell specific zinc finger protein. |
| AF176840 | Trailer AAAAAA, Position 1953 Mus musculus intestine N-acetylglucosamine 6-O-sulfotransferase |
| CCAAACTACT count=3 | |
| AF019385 | Trailer TGATAA, Position 1166 Mus musculus heparan sulfate D-glucosaminyl 3-O-sulfotransferase-1 |
| CCAGTGGGGA count=3 | |
| AF061569 | Trailer AGAGAA, Position 2182 Mus musculus coding region determinant binding protein mRNA |
| CCATTTACTA count=3 | |
| Y13071 | Trailer TTTGAA, Position 1380 Mus musculus mRNA for 26S proteasome non-ATPase subunit. |
| CCCAAGGGCT count=3 | |
| Y12657 | Trailer GGAATG, Position 1217 M.musculus mRNA for P450RA protein. |
| AF115769 | Trailer GGAATG, Position 1187 Mus musculus cytochrome P450 retinoic acid metabolizing enzyme |
| CCCACCAGCC count=3 | |
| AF106967 | Trailer ACCCCC, Position 216 Mus musculus I3 protein mRNA |
| CCCATTGCTG count=3 | |
| M32015 | Trailer TGGGCG, Position 1194 Mouse lysosomal membrane glycoprotein-type A (lgp-120) mRNA |
| CCCCCACCCC count=3 | |
| D87901 | Trailer ACC , Position 1091 Mouse mRNA for ARF4 |
| CCCTCCTCCA count=3 | |
| Y18644 | Trailer GGCAGT, Position 756 Mus musculus mRNA for methyltransferase-like protein 1. |
| AB023619 | Trailer GGCAGT, Position 810 Mus musculus mRNA for methyltransferase related protein |
| CCTCTCCCAG count=3 | |
| AJ243223 | Trailer GAACAA, Position 1038 Mus musculus mRNA for nephrocystin (Nphp1 gene). |
| AF176210 | Trailer GAACAA, Position 1053 Mus musculus nephrocystin (Nphp1) mRNA |
| AF127180 | Trailer GAACAA, Position 1041 Mus musculus nephrocystin (Nphp1) mRNA |
| CCTCTGGTGA count=3 | |
| AF053232 | Trailer CTCCAC, Position 1366 Mus musculus SIK similar protein mRNA |
| CCTGCTGCGC count=3 | |
| X57708 | Trailer ATTCTG, Position 524 M.musculus RNA for pH 34. |
| CCTTTTCCAT count=3 | |
| X81444 | Trailer TCTGGA, Position 80 M.musculus SIG-111 mRNA. |
| AF023483 | Trailer TCTGGA, Position 1061 Mus musculus HS-1-associating protein HAX-1L (mHAX-1s) pseudogene |
| AF023482 | Trailer TCTGGA, Position 898 Mus musculus HS1-associating protein (mHAX-1s) mRNA |
| CGAGCAGCCA count=3 | |
| L38847 | Trailer CATTCC, Position 4241 Mus musculus hepatoma transmembrane kinase ligand (HTK ligand) |
| CGATTGTGGC count=3 | |
| AF097439 | Trailer CCTGCC, Position 241 Mus musculus brain expressed X-linked protein 2 (Bex2) mRNA |
| CGCGGGCGTA count=3 | |
| K01700 | Trailer AACGCT, Position 1141 Mouse p53 cellular tumor antigen |
| M13873 | Trailer AACGCT, Position 1052 Mouse p53 mRNA |
| M13872 | Trailer AACGCT, Position 1096 Mouse p53 mRNA |
| X01237 | Trailer AACGCT, Position 1141 Mouse mRNA for cellular tumour antigen p53. |
| AF161020 | Trailer AACGCT, Position 994 Mus musculus tumor supressor p53 (p53) mRNA |
| AF151353 | Trailer AACGCT, Position 1106 Mus musculus tumor suppressor p53 (p53) mRNA |
| AF051368 | Trailer AACGCT, Position 1009 Mus musculus tumor suppressor p53 mRNA |
| AB017816 | Trailer AACGCT, Position 1085 Mus musculus mRNA for p53 |
| AB017815 | Trailer AACGCT, Position 1085 Mus musculus mRNA for p53 |
| CTATAAGTAA count=3 | |
| Y08460 | Trailer CCCCAA, Position 1750 Mus musculus mRNA for Mdes transmembrane protein. |
| CTCAAAGGCA count=3 | |
| AF229634 | Trailer GCTCAG, Position 765 Mus musculus solute carrier family 35 member 2 (Slc35a2) mRNA |
| CTCTTCCACG count=3 | |
| Y00516 | Trailer AGACAC, Position 308 Mouse mRNA for aldolase A. |
| CTGATTTTAT count=3 | |
| U18869 | Trailer TTCATG, Position 3282 Mus musculus mitogen-responsive 96 kDa phosphoprotein p96 mRNA |
| CTTGCAATAC count=3 | |
| AB041651 | Trailer CCTGTG, Position 1362 Mus musculus brain cDNA |
| CTTGCCCAGC count=3 | |
| J05609 | Trailer GGTGGG, Position 1860 Mouse serine protease inhibitor homologue (J6) mRNA |
| X60676 | Trailer GGTGGG, Position 1976 M.musculus HSP47 mRNA. |
| GATGAGAATA count=3 | |
| AF036898 | Trailer TATGAA, Position 1584 Mus musculus DNA polymerase epsilon small subunit mRNA |
| GCATTGCGCA count=3 | |
| D49686 | Trailer GGGGAG, Position 1400 Mus musculus mRNA for Tat binding protein-1 |
| GCCAAAATCC count=3 | |
| AB015613 | Trailer TAAATT, Position 233 Mus musculus mRNA for SET |
| GGCCGGGGCT count=3 | |
| X61431 | Trailer CTTGGA, Position 189 M.musculus mRNA for diazepam-binding inhibitor. |
| GGGGGGATGA count=3 | |
| AF095257 | Trailer CCAGCT, Position 1000 Mus musculus heterogeneous nuclear ribonucleoprotein C1/C2 mRNA |
| GGTGTCACAA count=3 | |
| AB004305 | Trailer TGA , Position 4714 Mus musculus mRNA for mBLVR |
| GTTTACTGAA count=3 | |
| AF095722 | Trailer TATGAG, Position 879 Mus musculus somatic histone binding protein NASP mRNA |
| AF034610 | Trailer TATGAG, Position 1938 Mus musculus nuclear autoantigenic sperm protein mRNA |
| TACATGTGGG count=3 | |
| M63836 | Trailer GAAAAA, Position 2407 Mouse beta-glucoronidase (Gus-s) mRNA |
| M28541 | Trailer GAAAAA, Position 2407 Mouse beta-glucoronidase (Gus-s) mRNA |
| M28540 | Trailer GAAAAA, Position 2407 Mouse beta-glucoronidase (Gus-s) mRNA |
| M19279 | Trailer GAAAAA, Position 2406 Mouse beta-glucuronidase (Gus-s-a allele) mRNA |
| J03047 | Trailer GAAAAA, Position 2407 Mouse beta-glucuronidase mRNA |
| TACTACCTAG count=3 | |
| X90582 | Trailer CTTTCA, Position 652 M.musculus mRNA for rat translocon-associated protein delta |
| TATCCAATGG count=3 | |
| U30839 | Trailer GAGGTC, Position 1084 Mus musculus voltage dependent anion channel 3 mRNA |
| TATGTGGCAT count=3 | |
| U07631 | Trailer TTTAAA, Position 1839 Mus musculus B6/CBA beta-hexosaminidase (Hexa) mRNA |
| X64331 | Trailer TTTCTC, Position 1790 M.musculus Hexa mRNA for beta-N-acetylhexosaminidase. |
| TATTGAAAGT count=3 | |
| X00525 | Trailer CAGCCC, Position 4676 Mouse 28S ribosomal RNA. |
| TCACAGGCTG count=3 | |
| X04017 | Trailer AGAAAT, Position 1944 Mouse mRNA for cysteine-rich glycoprotein SPARC. |
| TCACGATGAG count=3 | |
| AF186115 | Trailer CTATGA, Position 872 Mus musculus putative secreted protein ZSIG9 (Zsig9) mRNA |
| TCACTCTCAG count=3 | |
| M35725 | Trailer GAGAGC, Position 316 Mouse Cu-Zn superoxide dismutase mRNA |
| X06683 | Trailer GAGAGC, Position 316 Mouse mRNA for Cu-Zn superoxide dismutase (EC 1.15.1.1). |
| TCAGGTCACG count=3 | |
| AB045313 | Trailer GCTTTG, Position 1368 Mus musculus mmCdc20 mRNA |
| TCAGTTCTGT count=3 | |
| M88755 | Trailer GTTTAC, Position 768 M.musculus mRNA polyA site sequence. |
| AF011644 | Trailer GTTTAC, Position 870 Mus musculus oral tumor suppressor homolog (Doc-1) mRNA |
| TCTTCCATGT count=3 | |
| AB025409 | Trailer TACAAG, Position 706 Mus musculus mRNA for sid1334p |
| TGAAACCAAG count=3 | |
| X64713 | Trailer TATCTT, Position 1759 M.musculus mRNA for cyclin B1. |
| TGAGTACTGA count=3 | |
| M27501 | Trailer GCAAAG, Position 468 Mus musculus protamine 2 mRNA |
| M16456 | Trailer GCAAAG, Position 468 Mouse protamine 2 (mP2) mRNA. |
| X14004 | Trailer GCAAAG, Position 565 Mouse protamine 2 mRNA. |
| TGCATCGTGA count=3 | |
| U60824 | Trailer CCAAAG, Position 692 Mus musculus proteasome beta-subunit C5 (Psmb1) mRNA |
| X80686 | Trailer CCAAAG, Position 681 M.musculus mRNA for C5 component of protease. |
| TGCCTGCCTC count=3 | |
| AF205540 | Trailer TTCCTC, Position 2690 Mus musculus intestinal low-affinity peptide transporter protein |
| TGCCTGCCTT count=3 | |
| AF176530 | Trailer CCTGAT, Position 1379 Mus musculus F-box protein FBX15 mRNA |
| TGCTAGAGCT count=3 | |
| M30779 | Trailer GTAATA, Position 517 Mouse glucose-regulated protein 78 mRNA |
| D78645 | Trailer GTAATA, Position 2068 Mouse mRNA for 78 kDa glucose-regulated protein |
| M19351 | Trailer GTAATA, Position 437 Mouse immunoglobulin heavy chain binding protein mRNA |
| AJ002387 | Trailer GTAATA, Position 1987 Mus musculus mRNA for BiP. |
| TGCTTCCCAT count=3 | |
| AF035962 | Trailer TGTGGT, Position 1208 Mus musculus MRJ (Mrj) mRNA |
| AB028854 | Trailer TGTGGT, Position 1210 Mus musculus mRNA for mDj4 |
| TGGAGCCCTG count=3 | |
| AF136277 | Trailer GAATCC, Position 1325 Mus musculus cathepsin Z precursor (Ctsz) mRNA |
| TGTGGAGAAT count=3 | |
| U15571 | Trailer GTACAG, Position 3575 Mus musculus amyloid precursor-like protein 2 isoform 751 |
| Z27070 | Trailer GTACAG, Position 3422 M.musculus (balb/c) mRNA for putative protein. |
| TGTGTGTTAT count=3 | |
| Y10874 | Trailer CAGCAA, Position 667 M.musculus mRNA for proteasome subunit MC14. |
| D83585 | Trailer CAGCAA, Position 653 Mouse mRNA for proteasome Z subunit |
| TGTTGGGTAT count=3 | |
| AF107296 | Trailer AGCAGA, Position 3016 Mus musculus mitotic checkpoint protein kinase BUB1B (Bub1b) mRNA |
| TGTTTGGCTG count=3 | |
| AB025582 | Trailer TGAGGT, Position 355 Mus musculus mRNA for proliferation related acidic leucine rich |
| TGTTTGTACT count=3 | |
| AB041652 | Trailer CTGTAT, Position 2242 Mus musculus brain cDNA |
| TGTTTTGTAC count=3 | |
| U64033 | Trailer TTTTTA, Position 2637 Mus musculus Tera (Tera) mRNA |
| TTAAACCCAA count=3 | |
| U35142 | Trailer AGTATG, Position 1530 Mus musculus retinoblastoma-binding protein (mRbAp46) mRNA |
| TTCAAGAAGG count=3 | |
| U43918 | Trailer AAAAGG, Position 452 Mus musculus proliferation-associated protein 1 mRNA |
| X84789 | Trailer AAAAGG, Position 358 M.musculus mRNA for p38-2G4. |
| TTCAGATGCA count=3 | |
| M60474 | Trailer ATGGTT, Position 2408 Mouse myristoylated alanine-rich C-kinase substrate (MARCKS) mRNA |
| TTCAGCAGAT count=3 | |
| U05333 | Trailer ATTAGA, Position 236 Mus musculus co-chaperonin 'cofactor A' mRNA |
| TTCAGGCTTT count=3 | |
| AJ223069 | Trailer TTT , Position 1933 Mus musculus mRNA for TCF-3 protein. |
| AJ223233 | Trailer TTTAAA, Position 1848 Mus musculus mRNA for TCF-3 protein |
| AF057691 | Trailer TTTAAA, Position 1413 Mus musculus HMG box transcription factor (TCF-3) mRNA |
| TTCCTCTGCT count=3 | |
| L23971 | Trailer AAATTG, Position 3734 Mus musculus fragile X mental retardation syndrome protein (Fmr1) |
| TTCGGCTTCC count=3 | |
| AF151976 | Trailer CTGCTC, Position 2486 Mus musculus DNA cytosine-specific methyltransferase isoform 8 |
| AF151975 | Trailer CTGCTC, Position 2546 Mus musculus DNA cytosine-specific methyltransferase isoform 7 |
| AF151974 | Trailer CTGCTC, Position 2675 Mus musculus DNA cytosine-specific methyltransferase isoform 6 |
| AF151973 | Trailer CTGCTC, Position 2735 Mus musculus DNA cytosine-specific methyltransferase isoform 5 |
| AF151972 | Trailer CTGCTC, Position 2661 Mus musculus DNA cytosine-specific methyltransferase isoform 4 |
| AF151971 | Trailer CTGCTC, Position 2601 Mus musculus DNA cytosine-specific methyltransferase isoform 3 |
| AF151970 | Trailer CTGCTC, Position 2790 Mus musculus DNA cytosine-specific methyltransferase isoform 2 |
| AF151969 | Trailer CTGCTC, Position 2850 Mus musculus DNA cytosine-specific methyltransferase isoform 1 |
| AF068628 | Trailer CTGCTC, Position 2458 Mus musculus DNA cytosine-5 methyltransferase 3B3 (Dnmt3b) mRNA |
| AF068627 | Trailer CTGCTC, Position 2647 Mus musculus DNA cytosine-5 methyltransferase 3B2 (Dnmt3b) mRNA |
| TTGATTTCAC count=3 | |
| AF094820 | Trailer CGTTGT, Position 3733 Mus musculus subtilisin/kexin isozyme SKI-1 precursor |
| TTGGGGGCAC count=3 | |
| AB026808 | Trailer ACAGTG, Position 1185 Mus musculus mRNA for synaptotagmin XI |
| TTGTGTCAGT count=3 | |
| X61433 | Trailer CAGGTT, Position 1933 M.musculus mRNA for sodium/potassium ATPase beta subunit. |
| TTTGTATCGA count=3 | |
| AF140599 | Trailer ATGTCA, Position 168 Mus musculus ring-box protein 1 (Rbx1) mRNA |
| TTTTGTGTTT count=3 | |
| AF175968 | Trailer TTCTCC, Position 3831 Mus musculus Leman coiled-coil protein variant 2 (Lccp) mRNA |
| AF175967 | Trailer TTCTCC, Position 2974 Mus musculus Leman coiled-coil protein variant 1 (Lccp) mRNA |
| AAAATAAAAA count=2 | |
| U96109 | Trailer AAAAAT, Position 1842 Mus musculus proline-rich transcription factor ALX3 (Alx3) mRNA |
| AAAATGTTCA count=2 | |
| U42386 | Trailer ATCTTT, Position 1065 Mus musculus fibroblast growth factor inducible gene 14 (FIN14) |
| AAAATTGAAC count=2 | |
| Z46757 | Trailer ACCCAG, Position 432 M.musculus mRNA for high mobility group 2 protein. |
| AAATATGTGC count=2 | |
| AF288525 | Trailer CCTATG, Position 1218 Mus musculus myo-inositol 1-phosphate synthase A1 (IsynA1) mRNA |
| AAATTGGTAC count=2 | |
| AF035821 | Trailer AGAAAT, Position 466 Mus musculus GES30 mRNA |
| AF035208 | Trailer AGAAAT, Position 480 Mus musculus putative v-SNARE Vti1b mRNA |
| AACGCAGAAG count=2 | |
| M58633 | Trailer ATGGCC, Position 1529 Mouse p58/GTA protein kinase mRNA |
| L37092 | Trailer ATGGCC, Position 2758 Mus musculus cyclin-dependent kinase homologue (p130PITSL) mRNA |
| AACTGCGACA count=2 | |
| U01135 | Trailer TCTAGG, Position 255 Mus musculus B6D2F1 clone 2A-1 mRNA. |
| AAGAAGGAGG count=2 | |
| AF062655 | Trailer TGGGAA, Position 2484 Mus musculus plenty-of-prolines-101 mRNA |
| AAGAATAAGA count=2 | |
| M29462 | Trailer CCTGGA, Position 954 Mouse malate dehydrogenase mRNA |
| AAGATAGGAA count=2 | |
| AJ011740 | Trailer CACAAG, Position 1292 Mus musculus mRNA for integrase interactor 1a protein (INI1A). |
| AJ011739 | Trailer CACAAG, Position 1292 Mus musculus mRNA for integrase interactor 1a protein (INI1A). |
| AB041578 | Trailer CACAAG, Position 1274 Mus musculus brain cDNA |
| AB017344 | Trailer CACAAG, Position 1072 Mus musculus Ini1 27deletion mRNA for Integrase interactor |
| AB017343 | Trailer CACAAG, Position 1099 Mus musculus mRNA for Integrase interactor 1 |
| AAGCCAAAGA count=2 | |
| X63730 | Trailer ATGCAA, Position 257 M.musculus mRNA for SmN protein. |
| X62648 | Trailer ATGCAA, Position 304 M.musculus mRNA for SmN protein. |
| AAGCCTGTTA count=2 | |
| U12922 | Trailer GCCCTG, Position 939 Mus musculus CD1 geranylgeranyl transferase beta subunit mRNA |
| AF231926 | Trailer GCCCTG, Position 1021 Mus musculus Rab geranylgeranyl transferase |
| AAGGCCACGG count=2 | |
| U54639 | Trailer GGAGGA, Position 2416 Mus musculus RalGDS-like factor (RLF) mRNA |
| AAGGCCTTTC count=2 | |
| D30687 | Trailer TGTCCT, Position 616 Mouse mRNA for preadipocyte growth factor (glutathione |
| X53451 | Trailer TGTCCT, Position 575 Mouse mRNA for glutathione S-transferase II (EC 2.5.1.18). |
| AAGGCTCCTC count=2 | |
| AJ132012 | Trailer TCAGTG, Position 1831 Mus musculus mRNA for dihydroxyacetone phosphate acyltransferase |
| AF110769 | Trailer TCAGTG, Position 2000 Mus musculus peroxisomal acyl-CoA:dihydroxyacetone phosphate |
| AAGGTAGTAC count=2 | |
| AF175903 | Trailer CGTGTT, Position 823 Mus musculus ubiquitin C-terminal hydrolase UCH-L5 mRNA |
| AF148447 | Trailer CGTGTT, Position 817 Mus musculus ubiquitin C-terminal hydrolase UCH37 (UCH37) mRNA |
| AAGGTGCGCA count=2 | |
| AB007143 | Trailer GGCGCG, Position 831 Mus musculus mRNA for ZIP-kinase |
| AATAGCACCA count=2 | |
| AF044223 | Trailer CTCTTA, Position 1185 Mus musculus HCG-1 protein (HCG-1) mRNA |
| AATGGGCAGC count=2 | |
| AB011081 | Trailer AGCAAT, Position 453 Mus musculus mRNA for huntingtin interacting protein-2 |
| ACAAAAGAGG count=2 | |
| AB031387 | Trailer CTGTTG, Position 907 Mus musculus mRNA for Clast3 protein |
| ACAAATACAG count=2 | |
| X12507 | Trailer ATTCTG, Position 1373 Mouse eIF-4AII mRNA for protein synthesis initiation factor 4AII. |
| ACAGCAGAGA count=2 | |
| Y15128 | Trailer TGGCCA, Position 2174 Mus musculus mRNA for novel leucine zipper protein |
| AF141294 | Trailer TGGCCA, Position 3694 Mus musculus bamacan (Bam) mRNA |
| AF047601 | Trailer TGGCCA, Position 3671 Mus musculus SMCD (SmcD) mRNA |
| ACAGTGCGTG count=2 | |
| AF076156 | Trailer CCTGGC, Position 1181 Mus musculus catechol-O-methyltransferase (Comt) mRNA |
| ACCAAAGGTA count=2 | |
| AF238866 | Trailer CAGTTA, Position 734 Mus musculus LNR42 mRNA |
| ACCAACCACC count=2 | |
| AF072248 | Trailer CCAGCA, Position 590 Mus musculus methyl-CpG binding domain-containing protein MBD3 |
| ACCATCCTGA count=2 | |
| AB016424 | Trailer TTATAT, Position 1016 Mus musculus rbm3 mRNA |
| ACCTTTGCAT count=2 | |
| AF117887 | Trailer AGAAAA, Position 3085 Mus musculus protein arginine methyltransferase (Carm1) mRNA |
| ACGGTCACTT count=2 | |
| AJ001101 | Trailer TCAACA, Position 399 Mus musculus mRNA for gC1qBP gene. |
| ACGTTCTGAT count=2 | |
| D86726 | Trailer TGAGCT, Position 2441 Mouse mRNA for mMIS5 |
| ACTACAACTA count=2 | |
| U89652 | Trailer TCATTT, Position 10209 Mus musculus breast cancer susceptibility (BRCA2) mRNA |
| U82270 | Trailer TCATTT, Position 10171 Mus musculus breast cancer susceptibility (Brca2) mRNA |
| U65594 | Trailer TCATTT, Position 10459 Mus musculus BRCA2 (Brca2) mRNA |
| ACTCAGTGAA count=2 | |
| AF171100 | Trailer CAATCC, Position 1952 Mus musculus TBX1 protein mRNA |
| ACTCCTTTTG count=2 | |
| M16229 | Trailer AGGAAA, Position 967 Mouse mitochondrial malate dehydrogenase (mMDH) mRNA |
| ACTGCAGTCT count=2 | |
| AB017202 | Trailer ACCCGT, Position 4277 Mus musculus mRNA for entactin-2 |
| ACTGGGGTCA count=2 | |
| Z46720 | Trailer ATGGCA, Position 207 M.musculus mRNA for perinuclear binding protein. |
| ACTGGTGTTT count=2 | |
| AJ278191 | Trailer CCCATT, Position 4019 Mus musculus mRNA for putative mc7 protein (mc7 gene). |
| ACTTCTCTGG count=2 | |
| AF109314 | Trailer TCTCCA, Position 1238 Mus musculus glutaredoxin mRNA |
| AB013137 | Trailer TCTCCG, Position 1228 Mus musculus mRNA for glutaredoxin |
| ACTTTGTAGT count=2 | |
| AF071314 | Trailer CATGTA, Position 1515 Mus musculus COP9 complex subunit 4 (COPS4) mRNA |
| AGAAATATTC count=2 | |
| AF068625 | Trailer CAGAGT, Position 4114 Mus musculus DNA cytosine-5 methyltransferase 3A (Dnmt3a) mRNA |
| AGAAGGAGAT count=2 | |
| J02622 | Trailer ACTCTG, Position 2205 Mouse mitochondrial aspartate aminotransferase isoenzyme mRNA |
| AGAATAGCCA count=2 | |
| M58661 | Trailer CGTTTG, Position 1358 Mouse M1/69-J11d heat stable antigen mRNA |
| X53825 | Trailer CGTTTG, Position 1308 M.musculus mRNA for heat stable antigen. |
| AGAGGCACAG count=2 | |
| J03880 | Trailer GAAAGC, Position 3706 Mouse UDP-galactose:N-acetylglucosamine galactosyltransferase |
| D00314 | Trailer GAAAGC, Position 3683 Mouse N-acetylglucosamine galactosyltransferase (beta1-4GT) (EC |
| AGATTGGCGT count=2 | |
| AF175432 | Trailer GACCTG, Position 4987 Mus musculus DNA (cytosine-5)-methyltransferase (Dnmt1) mRNA |
| AF162282 | Trailer GACCTG, Position 4499 Mus musculus DNA methyltransferase mRNA |
| AGCACAGACA count=2 | |
| AB041615 | Trailer CCATTT, Position 1859 Mus musculus brain cDNA |
| AGCATGGATG count=2 | |
| Z15090 | Trailer AGAAAC, Position 235 M.musculus Apoc2 gene for apolipoprotein C2. |
| AGCCAAGCCA count=2 | |
| AF112185 | Trailer GACTTG, Position 2353 Mus musculus epithelial sodium channel alpha subunit mRNA |
| AGCCTACTAA count=2 | |
| U66835 | Trailer TTAAAA, Position 290 Mus musculus unknown protein mRNA |
| AGCGTGTAGC count=2 | |
| AF042491 | Trailer CATGCT, Position 983 Mus musculus putative membrane associated progesterone receptor |
| AGCTATGAAG count=2 | |
| AB039919 | Trailer AAGGAA, Position 559 Mus musculus rheb mRNA for Ras homolog |
| AGCTGAGTTC count=2 | |
| M64782 | Trailer CTGTTT, Position 818 Mouse folate-binding protein 1 (FBP1) mRNA |
| AGCTGTGGCC count=2 | |
| AF249894 | Trailer AGGAGC, Position 2516 Mus musculus phosphofructokinase-1 A isozyme (Pfka) mRNA |
| AGCTTCATCA count=2 | |
| M14220 | Trailer AGCAAC, Position 1687 Mouse neuroleukin mRNA |
| L09104 | Trailer AGCAAC, Position 2897 Mus musculus glucose phosphate isomerase mRNA |
| AGGACTTGGT count=2 | |
| X62154 | Trailer GAAGCT, Position 2478 M. musculus mRNA for P1 protein (P1.m). |
| AGGAGTTCAA count=2 | |
| AB016257 | Trailer GGTCAT, Position 1888 Mus musculus mRNA for OCTN1 |
| AGGATGGCTG count=2 | |
| U49112 | Trailer GATTCA, Position 567 Mus musculus calcium-binding protein ALG-2 (ALG-257) mRNA |
| X14938 | Trailer GATTCA, Position 397 Mouse mRNA for calcium-binding protein. |
| AGGCCTGAAC count=2 | |
| D85137 | Trailer CCGTCC, Position 1914 Mouse mRNA for PP1gamma |
| M27071 | Trailer CCGTCC, Position 1150 Mus musculus protein phosphatase type 1 (dis2m1) mRNA |
| U53456 | Trailer CCGTCC, Position 2006 Mus musculus protein phosphatase 1cgamma (PP1cgamma) mRNA |
| AGGTCATCGC count=2 | |
| U41416 | Trailer CTCCTT, Position 130 Mus musculus BALB/c 3T3 non-muscle alpha-actinin (FR-17) mRNA |
| AJ289242 | Trailer CTCCTT, Position 5660 Mus musculus mRNA for alpha-actinin 4 (Actn4 gene). |
| AGTAATTGAA count=2 | |
| AF159549 | Trailer CTGGAA, Position 1545 Mus musculus nuclear FMRP interacting protein 1 (Nufip1) mRNA |
| AGTATTGTGA count=2 | |
| AF057285 | Trailer GTGCAT, Position 698 Mus musculus intersectin-EH binding protein Ibp1 mRNA |
| AGTGCCTGGC count=2 | |
| U42383 | Trailer GCCAGA, Position 1441 Mus musculus fibroblast growth factor inducible gene 13 (FIN13) |
| AGTGCCTTTG count=2 | |
| X80638 | Trailer GCTACC, Position 490 M.musculus rhoC mRNA. |
| AGTTCAGACA count=2 | |
| U22015 | Trailer ACTGTG, Position 1894 Mus musculus retinoid X receptor interacting protein (RIP110) mRNA |
| AGTTGCCTGA count=2 | |
| U34259 | Trailer TTTCCC, Position 1168 Mus musculus lysosome-associated protein |
| AGTTTTTTAA count=2 | |
| AJ237586 | Trailer GAGATG, Position 2245 Mus musculus mRNA for hypothetical protein expressed in thymocytes |
| ATAAAAGTTC count=2 | |
| AF169300 | Trailer TATTAC, Position 2678 Mus musculus ring finger protein 4 (Rnf4) mRNA |
| ATATTCGGTC count=2 | |
| X63020 | Trailer AAGTCA, Position 421 M.musculus mRNA for U2-snRNP b'' (pRNP31). |
| X63019 | Trailer AAGTCA, Position 343 M.musculus mRNA for U2-snRNP b'' (pRNP11). |
| ATCGACACTT count=2 | |
| J01871 | Trailer CGAACG, Position 89 Mouse 5.8S ribosomal RNA. |
| ATCTAATATA count=2 | |
| AF031128 | Trailer ATTTTT, Position 1618 Mus musculus peroxisome membrane protein PEX2 mRNA |
| ATCTAATGAA count=2 | |
| U39643 | Trailer GTGTTA, Position 1781 Mus musculus FAF1 mRNA |
| ATGATAAACC count=2 | |
| U36799 | Trailer AAGTTA, Position 4611 Mus musculus retinoblastoma-related protein Rb2/p130 mRNA |
| Z68184 | Trailer AAGTTA, Position 1758 M.musculus mRNA for P130 protein (partial). |
| ATGCCCCAGG count=2 | |
| AF036875 | Trailer ACACAA, Position 727 Mus musculus multiple endocrine neoplasia type 1 candidate protein |
| CAAATATTGT count=2 | |
| M73329 | Trailer CATAGC, Position 1352 Mouse phospholipase C-alpha (PLC-alpha) mRNA |
| CAACACCGTA count=2 | |
| D26090 | Trailer TGCAGC, Position 2241 Mouse mRNA for mCDC46 protein |
| CAATAAAAGA count=2 | |
| J04694 | Trailer TGAATT, Position 5401 Mus musculus alpha-1 type IV collagen (Col4a-1) mRNA |
| X92439 | Trailer TGAATT, Position 262 M.musculus mRNA for alpha1(IV) chain of collagen type IV. |
| X02201 | Trailer TGAATT, Position 1444 Mouse mRNA fragment for basement membrane collagen alpha1(IV) |
| CACATGAGGA count=2 | |
| Y12474 | Trailer GATACT, Position 292 M.musculus mRNA for centrin gene. |
| CACGCAGAGC count=2 | |
| AF030635 | Trailer TCTCAA, Position 880 Mus musculus FK-506 binding protein homolog (SAM11) mRNA |
| CACTGTGAAG count=2 | |
| AB021289 | Trailer GATGGC, Position 805 Mus musculus mRNA for epididymal secretory protein |
| CACTTTACTA count=2 | |
| AF139179 | Trailer TGGTAA, Position 1271 Mus musculus p38 interacting protein mRNA |
| CAGAAGCTGA count=2 | |
| U27830 | Trailer TGGATG, Position 1645 Mus musculus mSTI1 mRNA |
| CAGAGGCAGG count=2 | |
| M89797 | Trailer TGCAGA, Position 192 Mouse Wnt-4 mRNA |
| CAGTGTCTTC count=2 | |
| U96634 | Trailer CAGGTT, Position 3735 Mus musculus p85SPR mRNA |
| AF247655 | Trailer CAGGTT, Position 3608 Mus musculus betaPix-c mRNA |
| AF247654 | Trailer CAGGTT, Position 4117 Mus musculus betaPix-b mRNA |
| CATCAATTTT count=2 | |
| X95399 | Trailer TAGTAT, Position 185 M.musculus mRNA for M31 protein |
| CATCCGTAAG count=2 | |
| U77040 | Trailer CCCCGG, Position 1180 Mus musculus LIM protein FHL2 (FHL2) mRNA |
| AF153340 | Trailer CCCCGG, Position 1057 Mus musculus four and a half LIM-domain protein DRAL mRNA |
| CATGACATCC count=2 | |
| U13705 | Trailer GCTGGA, Position 541 Mus musculus domesticus C57BL/6J plasma glutathione peroxidase |
| CATTGGTTTC count=2 | |
| L32836 | Trailer TCAGTC, Position 1657 Mus musculus (clone C7/B9) S-adenosyl homocysteine hydrolase (ahcy) |
| CATTTTAAAA count=2 | |
| M18209 | Trailer TTTGTA, Position 2420 Mouse transcription factor S-II |
| CCAACACAGC count=2 | |
| AJ272019 | Trailer GATATG, Position 417 Mus musculus mRNA for 20S proteasome subunit C2 (Psma1 gene). |
| AF060088 | Trailer GATATG, Position 388 Mus musculus proteasome subunit C2 (Psma1) mRNA |
| CCAACCCTGA count=2 | |
| X14971 | Trailer GAACTT, Position 2963 Mouse mRNA for alpha-adaptin (A). |
| CCACCTAGCA count=2 | |
| U09816 | Trailer GCCACC, Position 1853 Mus musculus GM2 activator protein (Gm2a) mRNA |
| CCACTGGTTA count=2 | |
| AF004106 | Trailer GGAATA, Position 1082 Mus musculus unknown mRNA |
| CCCACCCCGT count=2 | |
| AF121344 | Trailer GGCACA, Position 3040 Mus musculus tetraspanin Tspan-5 (Tspan5) mRNA |
| CCCAGCACAG count=2 | |
| AF123387 | Trailer GAAGGC, Position 1484 Mus musculus strain C57BL/6J Fus1 protein (Fus1) mRNA |
| CCCATCATCA count=2 | |
| AF176516 | Trailer TTCGCC, Position 1785 Mus musculus E2F1-inducible (Eig4) mRNA |
| CCCCAGGGTG count=2 | |
| U53584 | Trailer AAGCAC, Position 3851 Mus musculus DNA polymerase gamma mRNA |
| CCCTATGGGG count=2 | |
| AF168682 | Trailer AGGAGG, Position 1647 Mus musculus Fas activated serine/threonine FAST kinase mRNA |
| CCGCCCGTCA count=2 | |
| AF052621 | Trailer GCTCTT, Position 940 Mus musculus hypothetical protein COX4AL (COX4AL) mRNA |
| CCTAAACATC count=2 | |
| X03479 | Trailer CCAATG, Position 375 Mouse mRNA fragment for serum amyloid A (SAA) 3 protein. |
| CCTCTACCAT count=2 | |
| AB029949 | Trailer TGAGGC, Position 1728 Mus musculus SerRSmt mRNA for mitochondrial seryl-tRNA synthetase |
| CCTGCTCCCC count=2 | |
| U01662 | Trailer TCTGGG, Position 1527 Mus musculus clone M2-2 transcription factor USF2 mRNA |
| CCTGCTCCTC count=2 | |
| D32250 | Trailer CTCAAG, Position 991 Mouse mRNA for aldose reductase |
| L39795 | Trailer CTCAAG, Position 982 Mus musculus (clone MAR1) aldose reductase mRNA |
| U29152 | Trailer CTCAAG, Position 1001 Mus musculus aldose reductase mRNA |
| AF220100 | Trailer TGGAGG, Position 1098 Mus musculus PDZK1 mRNA |
| CCTGGAGCCA count=2 | |
| U92070 | Trailer TTGGGG, Position 42 Mus musculus IgM kappa chain variable region mRNA |
| AJ277812 | Trailer TTGGGG, Position 42 Mus musculus partial mRNA for immunoglobulin kappa light chain |
| AF045515 | Trailer TTGGGG, Position 42 Mus musculus 4B8 monoclonal antibody kappa light chain variable |
| AF045509 | Trailer TTGGGG, Position 42 Mus musculus dC11 anti-poly(dC) monoclonal antibody kappa light |
| CCTGGTTGCA count=2 | |
| AF289484 | Trailer TCTTCG, Position 1029 Mus musculus MYG1 mRNA |
| AF252871 | Trailer TCTTCG, Position 1384 Mus musculus GAMM1 protein mRNA |
| CCTTCTGTAC count=2 | |
| AF242377 | Trailer CGCAAA, Position 2570 Mus musculus KRAB zinc finger protein (Mzf22) mRNA |
| CGGAAGAAAT count=2 | |
| AF170920 | Trailer AAAGGC, Position 776 Mus musculus heat shock protein (HSPC030) mRNA |
| CGGAAGGCTT count=2 | |
| AF007862 | Trailer GCGAGT, Position 433 Mus musculus mm-Mago mRNA |
| CGGTCCAAGG count=2 | |
| D90374 | Trailer CTCTTG, Position 960 Mouse mRNA for APEX nuclease |
| CGTGAGCTAG count=2 | |
| AJ006215 | Trailer TTCTCT, Position 1400 Mus musculus mRNA for CMP-N-acetylneuraminic acid synthetase. |
| CGTTTGGCCT count=2 | |
| AB025048 | Trailer CTCAAT, Position 1841 Mus musculus mRNA for Sid6061p |
| CTATGATTGA count=2 | |
| AF167573 | Trailer CAACAA, Position 1561 Mus musculus protein methyltransferase (Jbp1) mRNA |
| CTCAGCCACT count=2 | |
| U69106 | Trailer GCTACG, Position 1687 Mus musculus aurora-related kinase 1 (ARK1) mRNA |
| CTCATCATCG count=2 | |
| X82438 | Trailer CGGGTA, Position 1263 M.musculus mRNA for monocarboxyalate transporter. |
| AF058055 | Trailer CGGGTA, Position 1452 Mus musculus monocarboxylate transporter 1 (mMCT1) mRNA |
| CTCCAGGACA count=2 | |
| M26925 | Trailer AGAAAC, Position 1257 Mouse galactosyltransferase mRNA |
| CTCCTCCCTG count=2 | |
| X78709 | Trailer GGCAGG, Position 3817 M.musculus NRF1 mRNA. |
| AF071084 | Trailer GGCAGG, Position 2328 Mus musculus Nrf1 splice variant D (Nrf1) mRNA |
| CTGAAGTCTG count=2 | |
| U92794 | Trailer CAGACC, Position 1712 Mus musculus alpha glucosidase II beta subunit mRNA |
| CTGCAGGACC count=2 | |
| AF145922 | Trailer CTACAG, Position 3424 Mus musculus serine/threonine kinase UNC51.2 (Unc51.2) mRNA |
| CTGCCACTGC count=2 | |
| AF116237 | Trailer TGTGTG, Position 1214 Mus musculus pseudouridine synthase 1 (Pus1) mRNA |
| AB041563 | Trailer TGTGTG, Position 1613 Mus musculus brain cDNA |
| CTGGACAGCA count=2 | |
| X61506 | Trailer GCAACA, Position 1398 Mouse E46 mRNA for E46 protein. |
| CTGGCGCGGG count=2 | |
| AF146224 | Trailer TAGCCA, Position 1160 Mus musculus HMG domain protein HMGX2 (Hmgx2) mRNA |
| CTGTTCAGAG count=2 | |
| D17546 | Trailer AACCCA, Position 4174 Mouse mRNA for collagen |
| CTTCTCAGAA count=2 | |
| AF242376 | Trailer GAGTCT, Position 156 Mus musculus KRAB zinc finger protein (Mzf13) mRNA |
| CTTGCAGGGG count=2 | |
| L33779 | Trailer AGGACA, Position 2474 Mouse desmocollin type 2 (DSC2) mRNA |
| CTTGTGGCTG count=2 | |
| AF041448 | Trailer CCATTA, Position 2706 Mus musculus advillin mRNA |
| CTTTTGAACA count=2 | |
| AF284573 | Trailer ATTAAA, Position 1112 Mus musculus Nit protein 2 (Nit2) mRNA |
| GAAGAGCAGA count=2 | |
| AF039840 | Trailer CCCTTC, Position 2092 Mus musculus mitogen-activated protein kinase-activated protein |
| GAGGCTCAGG count=2 | |
| AF182825 | Trailer GCAGCA, Position 822 Mus musculus cyclophilin-33 (Cyp33) mRNA |
| GCATGCGCCC count=2 | |
| U35312 | Trailer CATCTG, Position 7355 Mus musculus nuclear receptor co-repressor mRNA |
| U22016 | Trailer CATCTG, Position 1866 Mus musculus retinoid X receptor interacting protein (RIP13) mRNA |
| GCCTTCAGGT count=2 | |
| AJ276504 | Trailer TGCAGG, Position 672 Mus musculus mRNA for phosphorylated adaptor for RNA export (PHAX |
| GCTGGCCCAG count=2 | |
| AB024984 | Trailer GGAAAC, Position 1319 Mus musculus Sid329 mRNA |
| GCTTACTGTG count=2 | |
| X99807 | Trailer AGGAGA, Position 624 M.musculus mRNA for selenoprotein P. |
| GCTTTGATGA count=2 | |
| AB031290 | Trailer CCACAA, Position 1339 Mus musculus mRNA for C7-1 protein |
| GGGCGCGGTA count=2 | |
| U89506 | Trailer CTCAGC, Position 1140 Mus musculus Mlark mRNA |
| GGGTTGGAAA count=2 | |
| U01163 | Trailer GCTAAC, Position 2227 Mus musculus 129SV carnitine palmitoyltransferase II mRNA |
| GGTCAGAAAG count=2 | |
| AF044334 | Trailer TCGGTT, Position 1408 Mus musculus pleiotropic regulator 1 (PLRG1) mRNA |
| GGTCAGCACC count=2 | |
| D63850 | Trailer TGTGAA, Position 1872 Mus musculus mRNA for hepatoma-derived growth factor |
| GGTGCTGTCA count=2 | |
| X57277 | Trailer AATACC, Position 584 M.musculus rac1 gene. |
| GGTGGTTACG count=2 | |
| U92477 | Trailer CTGGTG, Position 1767 Mus musculus AblSH3 binding protein mRNA |
| AF162781 | Trailer CTGGTG, Position 4398 Mus musculus SH2-containing inositol 5-phosphatase 2 mRNA |
| GTAAAATTAG count=2 | |
| M76124 | Trailer ACGAAC, Position 1246 Mus musculus EGP314 precursor mRNA |
| GTCTTGCCCA count=2 | |
| M69293 | Trailer GGTGTC, Position 646 Mouse Id2 protein (Id-2) mRNA |
| GTGAGGCGGC count=2 | |
| L26320 | Trailer TGGACC, Position 871 Mouse flap endonuclease-1 (FEN-1) mRNA |
| GTGCTGGAGA count=2 | |
| D12483 | Trailer ACAACT, Position 751 Mouse mRNA for fibroblast growth factor |
| D12482 | Trailer ACAACT, Position 566 Mouse mRNA for fibroblast growth factor |
| U18673 | Trailer ACAACT, Position 444 Mus musculus fibroblast growth factor-8a (Fgf-8) mRNA |
| Z48746 | Trailer ACAACT, Position 420 M.musculus mRNA for fibroblast growth factor 8. |
| GTGGACGAGG count=2 | |
| X79233 | Trailer TGGCCC, Position 1737 M.musculus EWS mRNA. |
| GTTAACTATG count=2 | |
| Z38117 | Trailer AGCTAG, Position 2845 M.musculus mRNA for dead-box RNA helicase. |
| TAAGTCGCTC count=2 | |
| X99739 | Trailer CGTACA, Position 630 M.musculus mRNA for UBC9 protein |
| U82627 | Trailer CGTACA, Position 651 Mus musculus ubiquitin-conjugating enzyme mE2 mRNA |
| TAATAAACCA count=2 | |
| AF188712 | Trailer AGTGGC, Position 1951 Mus musculus mitochondrial dicarboxylate carrier mRNA |
| AF125536 | Trailer ATTGGT, Position 1802 Mus musculus histone deacetylase-3 (Hdac3) mRNA |
| AF098295 | Trailer ATTGGT, Position 1795 Mus musculus histone deacetylase 3 (Hdac3) mRNA |
| AF074882 | Trailer ATTGGT, Position 1241 Mus musculus strain C57BL/6J histone deacetylase 3 (Hdac3) mRNA |
| AF074881 | Trailer ATTGGT, Position 1814 Mus musculus strain C3H histone deacetylase 3 (Hdac3) mRNA |
| TAATTTTGCA count=2 | |
| AB000777 | Trailer GTCTTT, Position 2258 Mus musculus mRNA for photolyase/blue-light receptor homolog |
| TACATTGGGT count=2 | |
| D78643 | Trailer GTGGGG, Position 1419 Mouse seizure-related mRNA |
| TACCACCCTA count=2 | |
| X97042 | Trailer ACATCG, Position 250 Mus musculus mRNA for UBcM4 protein. |
| AJ130961 | Trailer ACATCG, Position 239 Mus musculus mRNA for ubiquitin-conjugating enzyme. |
| TAGAAGGGAG count=2 | |
| M97200 | Trailer CTTCAC, Position 1455 Mus musculus erythroid krueppel-like transcription factor mRNA |
| TAGGCACTAC count=2 | |
| M22479 | Trailer ATATGT, Position 1564 Mouse tropomyosin isoform 2 mRNA |
| TAGTTCTATC count=2 | |
| AB028895 | Trailer AAATAC, Position 2674 Mus musculus mRNA for cell-surface sialomucin MGC-24 |
| TCAAAACCAA count=2 | |
| AF053550 | Trailer AACCAC, Position 1039 Mus musculus metaxin 2 (Mtx2) mRNA |
| AB041562 | Trailer AACCAC, Position 1058 Mus musculus brain cDNA |
| TCAATTGTAA count=2 | |
| AF133427 | Trailer ATAGAA, Position 1469 Mus musculus tetraspanin TM4-A homolog mRNA |
| TCACAACTTC count=2 | |
| U70859 | Trailer CTGTGT, Position 2098 Mus musculus cationic amino acid transporter (CAT3) mRNA |
| TCACAGCCAG count=2 | |
| X59728 | Trailer TTCTGT, Position 72 M.musculus mRNA for gas5 growth arrest specific protein. |
| TCACATTTTG count=2 | |
| U62545 | Trailer AGAAAC, Position 282 Mus musculus FK506-binding protein 25 homolog (mFKBP25) mRNA |
| AF135595 | Trailer AGAAAC, Position 803 Mus musculus 25 kDa FK506 binding protein FKBP25 (Fkbp25) mRNA |
| AF110812 | Trailer AGAAAC, Position 796 Mus musculus 25 kDa FK506-binding protein (Fkbp25) mRNA |
| TCACCTTTGA count=2 | |
| U86112 | Trailer TACAGA, Position 439 Mus musculus NRD convertase mRNA |
| TCCATTTGGG count=2 | |
| M74227 | Trailer TGACCC, Position 1114 Mouse cyclophilin C (cyp C) mRNA |
| TCTAAAAAAA count=2 | |
| X78682 | Trailer AAA , Position 984 M.musculus mRNA for B-cell receptor associated protein (BAP) 32. |
| TCTACCACCC count=2 | |
| AB041582 | Trailer AGGTAG, Position 2265 Mus musculus brain cDNA |
| TCTACTGGCA count=2 | |
| U63648 | Trailer GGCCAT, Position 3415 Mus musculus p160 myb-binding protein (P160) mRNA |
| TCTGAGTTCG count=2 | |
| M17534 | Trailer AGGCCA, Position 1367 Mouse T-cell membrane glycoprotein (Ly-3) mRNA |
| L42996 | Trailer AGGCCA, Position 2501 Mus musculus nuclear-encoded mitochondrial acyltransferase mRNA |
| TCTGTGAGTT count=2 | |
| M86671 | Trailer TGAGGA, Position 1739 Mus musculus interleukin 12 p40 subunit |
| X74504 | Trailer CTGCTT, Position 1335 M.musculus T10 mRNA. |
| TCTTATACCC count=2 | |
| U07890 | Trailer AAAAAA, Position 2556 Mus musculus C57BL/6J epidermal surface antigen (mesa) mRNA |
| TCTTCCTGTC count=2 | |
| U28168 | Trailer CTGGCT, Position 333 Mus musculus GP106 mRNA |
| TCTTCTCGCG count=2 | |
| M19380 | Trailer CTCTCC, Position 591 Mouse calmodulin (Cam III) mRNA |
| TCTTTTCCTG count=2 | |
| AF159853 | Trailer ACCCTC, Position 3475 Mus musculus damage-specific DNA binding protein 1 (DDB1) mRNA |
| AB026432 | Trailer ACCCTC, Position 3515 Mus musculus mRNA for XPE UV-damaged DNA binding factor |
| TCTTTTGCCA count=2 | |
| L15447 | Trailer AGAAGT, Position 942 Mouse small nuclear RNA (Rnu1a-1) mRNA |
| TGAAACACTG count=2 | |
| L26316 | Trailer AAATTG, Position 1260 Mus musculus dihydrofolate reductase (dhfr) mRNA |
| TGAAAGTAGA count=2 | |
| U59761 | Trailer CTCTGC, Position 1454 Mus musculus Na+ |
| TGAAGGCTGT count=2 | |
| L11318 | Trailer CAAGTA, Position 442 Mouse CDC42Mm mRNA |
| TGACACTCTC count=2 | |
| AB011452 | Trailer CGGAGA, Position 1937 Mus musculus mRNA for N-acetylglucosamine-6-O-sulfotransferase |
| AB011451 | Trailer CGGAGA, Position 1937 Mus musculus mRNA for N-acetylglucosamine-6-O-sulfotransferase |
| TGATAAAATT count=2 | |
| M12899 | Trailer ACACCC, Position 1644 Mouse t complex polypeptide 1 (Tcp-1-b) mRNA |
| M20130 | Trailer ACACCC, Position 709 Mouse t complex polypeptide 1 (Tcp-1-a) mRNA |
| D90344 | Trailer ACACCC, Position 1637 Mouse mRNA for t-complex polypeptide 1A (Tcp-1a) |
| TGATTTGCTA count=2 | |
| Y00094 | Trailer GTTCTT, Position 1185 Mouse mRNA for ras-related YPT1 protein. |
| TGCAAAGGAA count=2 | |
| U95123 | Trailer AGAATG, Position 534 Mus musculus RNaseP protein p30 (Rpp30) mRNA |
| TGCAAATTCA count=2 | |
| L24554 | Trailer AGAATA, Position 1519 Mus musculus adenylosuccinate synthetase mRNA |
| TGCAACCCTA count=2 | |
| M18626 | Trailer TAGGTG, Position 292 Mouse long interspersed reptative mRNA. |
| TGCAGATGCA count=2 | |
| AF033187 | Trailer CTACGT, Position 1473 Mus musculus SOCS-5 mRNA |
| TGCCCACCAT count=2 | |
| AF119675 | Trailer ATTCCT, Position 911 Mus musculus small GTP-binding protein RAB25 (Rab25) mRNA |
| TGCGCTGACT count=2 | |
| J04491 | Trailer CCAAAG, Position 260 Mouse T-cell receptor L2G25B protein mRNA |
| M23447 | Trailer CCAAAG, Position 291 Mus musculus T cell secreted protein (TY5; SIS-alpha) mRNA |
| X12531 | Trailer CCAAAG, Position 283 Mouse mRNA for macrophage inflammatory protein (MIP). |
| AF065943 | Trailer CCAAAG, Position 239 Mus musculus strain NOD/LtJ small inducible cytokine A3 (ScyA3) |
| AF065942 | Trailer CCAAAG, Position 239 Mus musculus strain DBA/2J small inducible cytokine A3 (ScyA3) |
| AF065941 | Trailer CCAAAG, Position 239 Mus musculus strain BALB/cJ small inducible cytokine A3 (ScyA3) |
| AF065940 | Trailer CCAAAG, Position 239 Mus musculus strain B10.S/J small inducible cytokine A3 (ScyA3) |
| AF065939 | Trailer CCAAAG, Position 239 Mus musculus strain SJL/J small inducible cytokine A3 (ScyA3) mRNA |
| TGCGGGGCTG count=2 | |
| AF068116 | Trailer TGGTCT, Position 495 Mus musculus eIF4E-like protein 4E-LP mRNA |
| TGCTCAAAAT count=2 | |
| U52925 | Trailer CAAGAA, Position 6258 Mus musculus coagulation factor V mRNA |
| TGCTCCCAAG count=2 | |
| AJ250693 | Trailer TTATCT, Position 46 Mus musculus partial mRNA for sr528 protein. |
| TGCTGACAAG count=2 | |
| AF222786 | Trailer ACTTGA, Position 571 Mus musculus nudix hydrolase (NudT5) mRNA |
| TGCTGCAAGA count=2 | |
| AF131207 | Trailer CAGGCA, Position 1225 Mus musculus G21 protein mRNA |
| TGCTTATCCC count=2 | |
| U12473 | Trailer ATTTAG, Position 3175 Mus musculus Balb/c conserved helix-loop-helix ubiquitous kinase |
| TGCTTTCTCA count=2 | |
| U27462 | Trailer GGACTC, Position 2870 Mus musculus BS4 peptide mRNA |
| TGGAGACGGA count=2 | |
| AF129086 | Trailer AGCTCC, Position 1006 Mus musculus carboxy terminus of Hsp70-interacting protein (Chip) |
| TGGAGGTGGA count=2 | |
| U32394 | Trailer TGTGGA, Position 508 Mus musculus Max-interacting transcriptional repressor (Mad3) mRNA |
| AB027290 | Trailer CGGACA, Position 357 Mus musculus SID 99 mRNA for small GTP binding protein |
| TGGATTGTGG count=2 | |
| U35249 | Trailer AGCCAA, Position 1104 Mus musculus CDK-activating kinase assembly factor p36/MAT1 |
| TGGCTTATCT count=2 | |
| AF078752 | Trailer TCTTCT, Position 1124 Mus musculus diacylglycerol acyltransferase (Dgat) mRNA |
| TGGGAGCAGG count=2 | |
| AJ005790 | Trailer AGAATA, Position 1402 Mus musculus mRNA for PKL12 protein. |
| AF089869 | Trailer AGAATA, Position 1445 Mus musculus serine/threonine kinase 16 (Stk16) mRNA |
| AB022179 | Trailer AGAATA, Position 1400 Mus musculus mRNA for F5-2 |
| AB017197 | Trailer AGAATA, Position 1416 Mus musculus mRNA for EDPK |
| TGTAATTTCT count=2 | |
| AB025406 | Trailer TCTCTA, Position 1339 Mus musculus mRNA for sid23p |
| TGTACGTGGA count=2 | |
| AF055664 | Trailer GGGGTG, Position 1997 Mus musculus DnaJ-like protein (Hsj2) mRNA |
| TGTATCTTAA count=2 | |
| X89998 | Trailer TAAAAA, Position 2433 M.musculus mRNA for 17 beta-hydroxysteroid dehydrogenase type IV. |
| TGTCCTCTCA count=2 | |
| AF139659 | Trailer CGTGGG, Position 1094 Mus musculus origin recognition complex subunit 6 (Orc6) mRNA |
| TGTGACATTT count=2 | |
| X95641 | Trailer TTAATG, Position 2429 M.musculus mRNA for serine palmitoyltransferase subunit A. |
| TTAAACAATA count=2 | |
| AB041551 | Trailer ACTTAT, Position 1994 Mus musculus brain cDNA |
| TTAGTAGGTA count=2 | |
| U35623 | Trailer TTTTAG, Position 3005 Mus musculus EAT/MCL-1 mRNA |
| TTCAGGACTG count=2 | |
| AF058955 | Trailer GAGTCA, Position 757 Mus musculus ATP-specific succinyl-CoA synthetase beta subunit |
| TTCATAGTTC count=2 | |
| M64279 | Trailer TGGCTT, Position 2332 Mouse B cell-specific Mo-MLV integration site 1 (bmi-1) mRNA |
| TTCCTGGTAA count=2 | |
| AB028920 | Trailer TTGTTA, Position 2346 Mus musculus AKAP95 mRNA for A kinase anchor protein 95 |
| TTGCTATCAC count=2 | |
| D49744 | Trailer TGTAAC, Position 1559 Mouse mRNA for farnesyltransferase alpha subunit |
| TTGCTTATCC count=2 | |
| X83570 | Trailer CTGGTC, Position 991 M.musculus mRNA for neuronatin-3. |
| X83569 | Trailer CTGGTC, Position 910 M.musculus mRNA for neuronatin-2. |
| X83568 | Trailer CTGGTC, Position 803 M.musculus mRNA for neuronatin-1. |
| AB004048 | Trailer CTGGTC, Position 1242 Mus musculus mRNA for neuronatin |
| TTGGCTCTGT count=2 | |
| AJ006341 | Trailer GGAATG, Position 530 Mus musculus mRNA for peroxisomal integral membrane protein PMP34. |
| TTGTTGTGAG count=2 | |
| L29441 | Trailer TGTGTG, Position 1944 Mus musculus mRNA |
| AF181684 | Trailer TGTGTG, Position 2147 Mus musculus membrane protein TMS-1 mRNA |
| TTTAATAAAT count=2 | |
| AF035939 | Trailer GCGATA, Position 593 Mus musculus Magoh mRNA |
| TTTATCGCCA count=2 | |
| X70853 | Trailer CGGCAC, Position 283 M.musculus (isolate Mk24) mRNA for the 3' end of MB-90/fibulin C |
| TTTCTGGCTC count=2 | |
| D78647 | Trailer CACTCA, Position 2330 Mouse mRNA for phospholipase A2 |
| TTTGAAATGC count=2 | |
| U62483 | Trailer ATCTTT, Position 2340 Mus musculus ubiquitin conjugating enzyme (ubc4) mRNA |
| TTTGAGTTTG count=2 | |
| L16926 | Trailer AGGCCA, Position 2039 Mus musculus cdc25 phosphatase mRNA |
| U15562 | Trailer AGGCCA, Position 1821 Mus musculus CDC25 (Cdc25) mRNA |
| TTTTGCACTG count=2 | |
| D31966 | Trailer CTGTGC, Position 1177 Mouse mRNA for RNA polymerase I 40kD subunit |